Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24122 | 5' | -49.8 | NC_005263.2 | + | 3235 | 0.68 | 0.869869 |
Target: 5'- gGGCGAcga-CAggUAGGCGCGAucGCCGc -3' miRNA: 3'- -CCGCUacaaGUuaGUCCGCGUU--UGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 41 | 0.68 | 0.861428 |
Target: 5'- uGGCGcgGca-GGUCGGGCGC--GCCu -3' miRNA: 3'- -CCGCuaCaagUUAGUCCGCGuuUGGc -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 39692 | 0.68 | 0.858844 |
Target: 5'- cGCGAUGgggCGAgcgCGagcuggaaauggccGGCGCGGGCCGc -3' miRNA: 3'- cCGCUACaa-GUUa--GU--------------CCGCGUUUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 29974 | 0.69 | 0.815482 |
Target: 5'- cGGCGGgcaGcgCGAUCAGcGCGUAGaacucgGCCGg -3' miRNA: 3'- -CCGCUa--CaaGUUAGUC-CGCGUU------UGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 30269 | 0.69 | 0.805617 |
Target: 5'- cGGCGAagcgcUGcgCAAUCGGGcCGCGcgcggcauccucGGCCGc -3' miRNA: 3'- -CCGCU-----ACaaGUUAGUCC-GCGU------------UUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 3600 | 0.69 | 0.805617 |
Target: 5'- aGCGAuUGUauucgccCAAUCGGGCGCcugcGGGCCGu -3' miRNA: 3'- cCGCU-ACAa------GUUAGUCCGCG----UUUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 33286 | 0.69 | 0.805617 |
Target: 5'- cGGCGAUGUacCAG-CAGGUGCcgcuguCCGa -3' miRNA: 3'- -CCGCUACAa-GUUaGUCCGCGuuu---GGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 15622 | 0.69 | 0.802618 |
Target: 5'- cGGCGAaGUUCGugcgcgccagguugAUCAGGaaCGCA-ACCGg -3' miRNA: 3'- -CCGCUaCAAGU--------------UAGUCC--GCGUuUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 44283 | 0.69 | 0.794535 |
Target: 5'- uGGgGAuggguuacgucccUGUUCGAUCcGGCGCucGCCu -3' miRNA: 3'- -CCgCU-------------ACAAGUUAGuCCGCGuuUGGc -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 3089 | 0.7 | 0.785301 |
Target: 5'- cGGCGAUcuucgccucGUUCGA-CAGcGCGcCGAACCa -3' miRNA: 3'- -CCGCUA---------CAAGUUaGUC-CGC-GUUUGGc -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 34458 | 0.7 | 0.779066 |
Target: 5'- cGCGGUGcgCAcgaccgucauccaugAUCAGGCGUucGGCCGc -3' miRNA: 3'- cCGCUACaaGU---------------UAGUCCGCGu-UUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 28989 | 0.7 | 0.764288 |
Target: 5'- cGGCGAUGcgC--UC-GGCGCGgccGACCGg -3' miRNA: 3'- -CCGCUACaaGuuAGuCCGCGU---UUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 17417 | 0.7 | 0.742681 |
Target: 5'- gGGCGGUG-UCg--CAGGUGCAAcagcgGCCa -3' miRNA: 3'- -CCGCUACaAGuuaGUCCGCGUU-----UGGc -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 33664 | 0.71 | 0.698104 |
Target: 5'- aGCGcgGagUCGAUgCGGGCGCGAAUCu -3' miRNA: 3'- cCGCuaCa-AGUUA-GUCCGCGUUUGGc -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 41671 | 0.71 | 0.686753 |
Target: 5'- uGGCGGcagaUC-GUCGGGCGCGGACUGc -3' miRNA: 3'- -CCGCUaca-AGuUAGUCCGCGUUUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 3322 | 0.72 | 0.66389 |
Target: 5'- cGCGGUGUUCAacGUCuGcGCGCc-GCCGg -3' miRNA: 3'- cCGCUACAAGU--UAGuC-CGCGuuUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 6707 | 0.72 | 0.652403 |
Target: 5'- aGGCGAaGUUUAAUCGGGuCGUcAACgGg -3' miRNA: 3'- -CCGCUaCAAGUUAGUCC-GCGuUUGgC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 15397 | 0.73 | 0.583454 |
Target: 5'- uGGCGAUccgCAcggCGGGCaGCAAGCCGg -3' miRNA: 3'- -CCGCUAcaaGUua-GUCCG-CGUUUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 22808 | 0.74 | 0.549436 |
Target: 5'- aGCGGUcGUUCAugCGGGCGCuccuGCCGa -3' miRNA: 3'- cCGCUA-CAAGUuaGUCCGCGuu--UGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 27150 | 0.77 | 0.383154 |
Target: 5'- cGGCGAUGUcCGA-CAGcGCGCGcGCCGu -3' miRNA: 3'- -CCGCUACAaGUUaGUC-CGCGUuUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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