miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24122 5' -49.8 NC_005263.2 + 41 0.68 0.861428
Target:  5'- uGGCGcgGca-GGUCGGGCGC--GCCu -3'
miRNA:   3'- -CCGCuaCaagUUAGUCCGCGuuUGGc -5'
24122 5' -49.8 NC_005263.2 + 1397 0.68 0.87804
Target:  5'- aGCGG-GUUCGAUUAuugcuugucgucGGCGCGcGCCGc -3'
miRNA:   3'- cCGCUaCAAGUUAGU------------CCGCGUuUGGC- -5'
24122 5' -49.8 NC_005263.2 + 1894 0.66 0.927164
Target:  5'- uGGCGggGUUgcCGAUCAGGaaGUAccAGCCGc -3'
miRNA:   3'- -CCGCuaCAA--GUUAGUCCg-CGU--UUGGC- -5'
24122 5' -49.8 NC_005263.2 + 3089 0.7 0.785301
Target:  5'- cGGCGAUcuucgccucGUUCGA-CAGcGCGcCGAACCa -3'
miRNA:   3'- -CCGCUA---------CAAGUUaGUC-CGC-GUUUGGc -5'
24122 5' -49.8 NC_005263.2 + 3235 0.68 0.869869
Target:  5'- gGGCGAcga-CAggUAGGCGCGAucGCCGc -3'
miRNA:   3'- -CCGCUacaaGUuaGUCCGCGUU--UGGC- -5'
24122 5' -49.8 NC_005263.2 + 3322 0.72 0.66389
Target:  5'- cGCGGUGUUCAacGUCuGcGCGCc-GCCGg -3'
miRNA:   3'- cCGCUACAAGU--UAGuC-CGCGuuUGGC- -5'
24122 5' -49.8 NC_005263.2 + 3600 0.69 0.805617
Target:  5'- aGCGAuUGUauucgccCAAUCGGGCGCcugcGGGCCGu -3'
miRNA:   3'- cCGCU-ACAa------GUUAGUCCGCG----UUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 5251 0.66 0.943724
Target:  5'- aGGCGccGUcaUCAG-CGGGCGguG-CCGg -3'
miRNA:   3'- -CCGCuaCA--AGUUaGUCCGCguUuGGC- -5'
24122 5' -49.8 NC_005263.2 + 6707 0.72 0.652403
Target:  5'- aGGCGAaGUUUAAUCGGGuCGUcAACgGg -3'
miRNA:   3'- -CCGCUaCAAGUUAGUCC-GCGuUUGgC- -5'
24122 5' -49.8 NC_005263.2 + 7163 0.67 0.885933
Target:  5'- uGGUGcAUGcgaUCuuUCAuGCGCAAGCCGg -3'
miRNA:   3'- -CCGC-UACa--AGuuAGUcCGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 8853 0.67 0.885933
Target:  5'- aGGCGgcGcgCG---GGGCGCGAGCCc -3'
miRNA:   3'- -CCGCuaCaaGUuagUCCGCGUUUGGc -5'
24122 5' -49.8 NC_005263.2 + 10629 0.67 0.90581
Target:  5'- cGGCGccGUUCGucacgccgCAGuacacauggacgccGCGCAGACCGc -3'
miRNA:   3'- -CCGCuaCAAGUua------GUC--------------CGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 15313 0.67 0.893542
Target:  5'- aGCGAgcUGcgCG---AGGCGCGGGCCGa -3'
miRNA:   3'- cCGCU--ACaaGUuagUCCGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 15397 0.73 0.583454
Target:  5'- uGGCGAUccgCAcggCGGGCaGCAAGCCGg -3'
miRNA:   3'- -CCGCUAcaaGUua-GUCCG-CGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 15622 0.69 0.802618
Target:  5'- cGGCGAaGUUCGugcgcgccagguugAUCAGGaaCGCA-ACCGg -3'
miRNA:   3'- -CCGCUaCAAGU--------------UAGUCC--GCGUuUGGC- -5'
24122 5' -49.8 NC_005263.2 + 17417 0.7 0.742681
Target:  5'- gGGCGGUG-UCg--CAGGUGCAAcagcgGCCa -3'
miRNA:   3'- -CCGCUACaAGuuaGUCCGCGUU-----UGGc -5'
24122 5' -49.8 NC_005263.2 + 19774 0.66 0.932986
Target:  5'- uGGCcGUGUgggCAAUCGuuCGCAAGCUGa -3'
miRNA:   3'- -CCGcUACAa--GUUAGUccGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 22808 0.74 0.549436
Target:  5'- aGCGGUcGUUCAugCGGGCGCuccuGCCGa -3'
miRNA:   3'- cCGCUA-CAAGUuaGUCCGCGuu--UGGC- -5'
24122 5' -49.8 NC_005263.2 + 24952 0.66 0.943724
Target:  5'- cGGCGGUGcgCGGUU---CGCAGAUCGg -3'
miRNA:   3'- -CCGCUACaaGUUAGuccGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 27150 0.77 0.383154
Target:  5'- cGGCGAUGUcCGA-CAGcGCGCGcGCCGu -3'
miRNA:   3'- -CCGCUACAaGUUaGUC-CGCGUuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.