miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24122 5' -49.8 NC_005263.2 + 46788 0.67 0.907886
Target:  5'- cGUGuucGUGUUCAAUCAGcUGCAAuucacGCCGa -3'
miRNA:   3'- cCGC---UACAAGUUAGUCcGCGUU-----UGGC- -5'
24122 5' -49.8 NC_005263.2 + 44439 0.67 0.883594
Target:  5'- aGGCGAUGgaagaccugaAGGCGUucGCCGa -3'
miRNA:   3'- -CCGCUACaaguuag---UCCGCGuuUGGC- -5'
24122 5' -49.8 NC_005263.2 + 44283 0.69 0.794535
Target:  5'- uGGgGAuggguuacgucccUGUUCGAUCcGGCGCucGCCu -3'
miRNA:   3'- -CCgCU-------------ACAAGUUAGuCCGCGuuUGGc -5'
24122 5' -49.8 NC_005263.2 + 42929 1.12 0.002214
Target:  5'- aGGCGAUGUUCAAUCAGGCGCAAACCGc -3'
miRNA:   3'- -CCGCUACAAGUUAGUCCGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 42775 0.66 0.932986
Target:  5'- cGGCGgcGUgaCGAUCcagcgcgaAGGCGCGAaagacccgaacGCCGa -3'
miRNA:   3'- -CCGCuaCAa-GUUAG--------UCCGCGUU-----------UGGC- -5'
24122 5' -49.8 NC_005263.2 + 41671 0.71 0.686753
Target:  5'- uGGCGGcagaUC-GUCGGGCGCGGACUGc -3'
miRNA:   3'- -CCGCUaca-AGuUAGUCCGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 40948 0.66 0.943724
Target:  5'- cGGCGAUGgccgcgCAAUaGGGuCGCuugacauAGCCGu -3'
miRNA:   3'- -CCGCUACaa----GUUAgUCC-GCGu------UUGGC- -5'
24122 5' -49.8 NC_005263.2 + 40009 0.68 0.87804
Target:  5'- cGGCGAUGUcCGAUCuGaGCaagaCGAACCa -3'
miRNA:   3'- -CCGCUACAaGUUAGuC-CGc---GUUUGGc -5'
24122 5' -49.8 NC_005263.2 + 39692 0.68 0.858844
Target:  5'- cGCGAUGgggCGAgcgCGagcuggaaauggccGGCGCGGGCCGc -3'
miRNA:   3'- cCGCUACaa-GUUa--GU--------------CCGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 37339 0.67 0.885933
Target:  5'- gGGCGAUGcguucCAGUCGGuCGC-GGCCGu -3'
miRNA:   3'- -CCGCUACaa---GUUAGUCcGCGuUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 35540 0.67 0.907886
Target:  5'- cGGCGgcGcgCGggCGGGCGCuacggcGCCGc -3'
miRNA:   3'- -CCGCuaCaaGUuaGUCCGCGuu----UGGC- -5'
24122 5' -49.8 NC_005263.2 + 34458 0.7 0.779066
Target:  5'- cGCGGUGcgCAcgaccgucauccaugAUCAGGCGUucGGCCGc -3'
miRNA:   3'- cCGCUACaaGU---------------UAGUCCGCGu-UUGGC- -5'
24122 5' -49.8 NC_005263.2 + 33664 0.71 0.698104
Target:  5'- aGCGcgGagUCGAUgCGGGCGCGAAUCu -3'
miRNA:   3'- cCGCuaCa-AGUUA-GUCCGCGUUUGGc -5'
24122 5' -49.8 NC_005263.2 + 33286 0.69 0.805617
Target:  5'- cGGCGAUGUacCAG-CAGGUGCcgcuguCCGa -3'
miRNA:   3'- -CCGCUACAa-GUUaGUCCGCGuuu---GGC- -5'
24122 5' -49.8 NC_005263.2 + 31334 0.67 0.885933
Target:  5'- cGGCGAUacgccggCGgccGUCAGGCGCGAcuCCa -3'
miRNA:   3'- -CCGCUAcaa----GU---UAGUCCGCGUUu-GGc -5'
24122 5' -49.8 NC_005263.2 + 30269 0.69 0.805617
Target:  5'- cGGCGAagcgcUGcgCAAUCGGGcCGCGcgcggcauccucGGCCGc -3'
miRNA:   3'- -CCGCU-----ACaaGUUAGUCC-GCGU------------UUGGC- -5'
24122 5' -49.8 NC_005263.2 + 29974 0.69 0.815482
Target:  5'- cGGCGGgcaGcgCGAUCAGcGCGUAGaacucgGCCGg -3'
miRNA:   3'- -CCGCUa--CaaGUUAGUC-CGCGUU------UGGC- -5'
24122 5' -49.8 NC_005263.2 + 28989 0.7 0.764288
Target:  5'- cGGCGAUGcgC--UC-GGCGCGgccGACCGg -3'
miRNA:   3'- -CCGCUACaaGuuAGuCCGCGU---UUGGC- -5'
24122 5' -49.8 NC_005263.2 + 28963 0.66 0.943724
Target:  5'- cGGauCGGUGUcgCGGaauUCGGGCGCAuGCUGc -3'
miRNA:   3'- -CC--GCUACAa-GUU---AGUCCGCGUuUGGC- -5'
24122 5' -49.8 NC_005263.2 + 27726 0.67 0.885933
Target:  5'- uGGCGAguUGUaCGguGUCGGcGCGCGAucaGCCa -3'
miRNA:   3'- -CCGCU--ACAaGU--UAGUC-CGCGUU---UGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.