Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24122 | 5' | -49.8 | NC_005263.2 | + | 3322 | 0.72 | 0.66389 |
Target: 5'- cGCGGUGUUCAacGUCuGcGCGCc-GCCGg -3' miRNA: 3'- cCGCUACAAGU--UAGuC-CGCGuuUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 3235 | 0.68 | 0.869869 |
Target: 5'- gGGCGAcga-CAggUAGGCGCGAucGCCGc -3' miRNA: 3'- -CCGCUacaaGUuaGUCCGCGUU--UGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 39692 | 0.68 | 0.858844 |
Target: 5'- cGCGAUGgggCGAgcgCGagcuggaaauggccGGCGCGGGCCGc -3' miRNA: 3'- cCGCUACaa-GUUa--GU--------------CCGCGUUUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 29974 | 0.69 | 0.815482 |
Target: 5'- cGGCGGgcaGcgCGAUCAGcGCGUAGaacucgGCCGg -3' miRNA: 3'- -CCGCUa--CaaGUUAGUC-CGCGUU------UGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 33286 | 0.69 | 0.805617 |
Target: 5'- cGGCGAUGUacCAG-CAGGUGCcgcuguCCGa -3' miRNA: 3'- -CCGCUACAa-GUUaGUCCGCGuuu---GGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 44283 | 0.69 | 0.794535 |
Target: 5'- uGGgGAuggguuacgucccUGUUCGAUCcGGCGCucGCCu -3' miRNA: 3'- -CCgCU-------------ACAAGUUAGuCCGCGuuUGGc -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 34458 | 0.7 | 0.779066 |
Target: 5'- cGCGGUGcgCAcgaccgucauccaugAUCAGGCGUucGGCCGc -3' miRNA: 3'- cCGCUACaaGU---------------UAGUCCGCGu-UUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 28989 | 0.7 | 0.764288 |
Target: 5'- cGGCGAUGcgC--UC-GGCGCGgccGACCGg -3' miRNA: 3'- -CCGCUACaaGuuAGuCCGCGU---UUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 17417 | 0.7 | 0.742681 |
Target: 5'- gGGCGGUG-UCg--CAGGUGCAAcagcgGCCa -3' miRNA: 3'- -CCGCUACaAGuuaGUCCGCGUU-----UGGc -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 1397 | 0.68 | 0.87804 |
Target: 5'- aGCGG-GUUCGAUUAuugcuugucgucGGCGCGcGCCGc -3' miRNA: 3'- cCGCUaCAAGUUAGU------------CCGCGUuUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 40009 | 0.68 | 0.87804 |
Target: 5'- cGGCGAUGUcCGAUCuGaGCaagaCGAACCa -3' miRNA: 3'- -CCGCUACAaGUUAGuC-CGc---GUUUGGc -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 7163 | 0.67 | 0.885933 |
Target: 5'- uGGUGcAUGcgaUCuuUCAuGCGCAAGCCGg -3' miRNA: 3'- -CCGC-UACa--AGuuAGUcCGCGUUUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 5251 | 0.66 | 0.943724 |
Target: 5'- aGGCGccGUcaUCAG-CGGGCGguG-CCGg -3' miRNA: 3'- -CCGCuaCA--AGUUaGUCCGCguUuGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 40948 | 0.66 | 0.943724 |
Target: 5'- cGGCGAUGgccgcgCAAUaGGGuCGCuugacauAGCCGu -3' miRNA: 3'- -CCGCUACaa----GUUAgUCC-GCGu------UUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 27527 | 0.66 | 0.938505 |
Target: 5'- cGCGGUGcccgUCGG-CAcGGCcgGCAGGCCGg -3' miRNA: 3'- cCGCUACa---AGUUaGU-CCG--CGUUUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 42775 | 0.66 | 0.932986 |
Target: 5'- cGGCGgcGUgaCGAUCcagcgcgaAGGCGCGAaagacccgaacGCCGa -3' miRNA: 3'- -CCGCuaCAa-GUUAG--------UCCGCGUU-----------UGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 46788 | 0.67 | 0.907886 |
Target: 5'- cGUGuucGUGUUCAAUCAGcUGCAAuucacGCCGa -3' miRNA: 3'- cCGC---UACAAGUUAGUCcGCGUU-----UGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 35540 | 0.67 | 0.907886 |
Target: 5'- cGGCGgcGcgCGggCGGGCGCuacggcGCCGc -3' miRNA: 3'- -CCGCuaCaaGUuaGUCCGCGuu----UGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 10629 | 0.67 | 0.90581 |
Target: 5'- cGGCGccGUUCGucacgccgCAGuacacauggacgccGCGCAGACCGc -3' miRNA: 3'- -CCGCuaCAAGUua------GUC--------------CGCGUUUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 15313 | 0.67 | 0.893542 |
Target: 5'- aGCGAgcUGcgCG---AGGCGCGGGCCGa -3' miRNA: 3'- cCGCU--ACaaGUuagUCCGCGUUUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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