miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24122 5' -49.8 NC_005263.2 + 3235 0.68 0.869869
Target:  5'- gGGCGAcga-CAggUAGGCGCGAucGCCGc -3'
miRNA:   3'- -CCGCUacaaGUuaGUCCGCGUU--UGGC- -5'
24122 5' -49.8 NC_005263.2 + 41 0.68 0.861428
Target:  5'- uGGCGcgGca-GGUCGGGCGC--GCCu -3'
miRNA:   3'- -CCGCuaCaagUUAGUCCGCGuuUGGc -5'
24122 5' -49.8 NC_005263.2 + 39692 0.68 0.858844
Target:  5'- cGCGAUGgggCGAgcgCGagcuggaaauggccGGCGCGGGCCGc -3'
miRNA:   3'- cCGCUACaa-GUUa--GU--------------CCGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 29974 0.69 0.815482
Target:  5'- cGGCGGgcaGcgCGAUCAGcGCGUAGaacucgGCCGg -3'
miRNA:   3'- -CCGCUa--CaaGUUAGUC-CGCGUU------UGGC- -5'
24122 5' -49.8 NC_005263.2 + 30269 0.69 0.805617
Target:  5'- cGGCGAagcgcUGcgCAAUCGGGcCGCGcgcggcauccucGGCCGc -3'
miRNA:   3'- -CCGCU-----ACaaGUUAGUCC-GCGU------------UUGGC- -5'
24122 5' -49.8 NC_005263.2 + 3600 0.69 0.805617
Target:  5'- aGCGAuUGUauucgccCAAUCGGGCGCcugcGGGCCGu -3'
miRNA:   3'- cCGCU-ACAa------GUUAGUCCGCG----UUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 33286 0.69 0.805617
Target:  5'- cGGCGAUGUacCAG-CAGGUGCcgcuguCCGa -3'
miRNA:   3'- -CCGCUACAa-GUUaGUCCGCGuuu---GGC- -5'
24122 5' -49.8 NC_005263.2 + 15622 0.69 0.802618
Target:  5'- cGGCGAaGUUCGugcgcgccagguugAUCAGGaaCGCA-ACCGg -3'
miRNA:   3'- -CCGCUaCAAGU--------------UAGUCC--GCGUuUGGC- -5'
24122 5' -49.8 NC_005263.2 + 44283 0.69 0.794535
Target:  5'- uGGgGAuggguuacgucccUGUUCGAUCcGGCGCucGCCu -3'
miRNA:   3'- -CCgCU-------------ACAAGUUAGuCCGCGuuUGGc -5'
24122 5' -49.8 NC_005263.2 + 3089 0.7 0.785301
Target:  5'- cGGCGAUcuucgccucGUUCGA-CAGcGCGcCGAACCa -3'
miRNA:   3'- -CCGCUA---------CAAGUUaGUC-CGC-GUUUGGc -5'
24122 5' -49.8 NC_005263.2 + 34458 0.7 0.779066
Target:  5'- cGCGGUGcgCAcgaccgucauccaugAUCAGGCGUucGGCCGc -3'
miRNA:   3'- cCGCUACaaGU---------------UAGUCCGCGu-UUGGC- -5'
24122 5' -49.8 NC_005263.2 + 28989 0.7 0.764288
Target:  5'- cGGCGAUGcgC--UC-GGCGCGgccGACCGg -3'
miRNA:   3'- -CCGCUACaaGuuAGuCCGCGU---UUGGC- -5'
24122 5' -49.8 NC_005263.2 + 17417 0.7 0.742681
Target:  5'- gGGCGGUG-UCg--CAGGUGCAAcagcgGCCa -3'
miRNA:   3'- -CCGCUACaAGuuaGUCCGCGUU-----UGGc -5'
24122 5' -49.8 NC_005263.2 + 33664 0.71 0.698104
Target:  5'- aGCGcgGagUCGAUgCGGGCGCGAAUCu -3'
miRNA:   3'- cCGCuaCa-AGUUA-GUCCGCGUUUGGc -5'
24122 5' -49.8 NC_005263.2 + 41671 0.71 0.686753
Target:  5'- uGGCGGcagaUC-GUCGGGCGCGGACUGc -3'
miRNA:   3'- -CCGCUaca-AGuUAGUCCGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 3322 0.72 0.66389
Target:  5'- cGCGGUGUUCAacGUCuGcGCGCc-GCCGg -3'
miRNA:   3'- cCGCUACAAGU--UAGuC-CGCGuuUGGC- -5'
24122 5' -49.8 NC_005263.2 + 6707 0.72 0.652403
Target:  5'- aGGCGAaGUUUAAUCGGGuCGUcAACgGg -3'
miRNA:   3'- -CCGCUaCAAGUUAGUCC-GCGuUUGgC- -5'
24122 5' -49.8 NC_005263.2 + 15397 0.73 0.583454
Target:  5'- uGGCGAUccgCAcggCGGGCaGCAAGCCGg -3'
miRNA:   3'- -CCGCUAcaaGUua-GUCCG-CGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 22808 0.74 0.549436
Target:  5'- aGCGGUcGUUCAugCGGGCGCuccuGCCGa -3'
miRNA:   3'- cCGCUA-CAAGUuaGUCCGCGuu--UGGC- -5'
24122 5' -49.8 NC_005263.2 + 27150 0.77 0.383154
Target:  5'- cGGCGAUGUcCGA-CAGcGCGCGcGCCGu -3'
miRNA:   3'- -CCGCUACAaGUUaGUC-CGCGUuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.