miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24123 3' -52.4 NC_005263.2 + 42642 1.11 0.00109
Target:  5'- cCGAAGCGAAGUGGCUGCGCAACGAACa -3'
miRNA:   3'- -GCUUCGCUUCACCGACGCGUUGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 9186 0.76 0.265081
Target:  5'- gCGAAGCGAcGcGGgUGCGCAaACGGGCg -3'
miRNA:   3'- -GCUUCGCUuCaCCgACGCGU-UGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 24455 0.74 0.35156
Target:  5'- aCGGcacGGCGAAG-GGUUuccuacGCGCGACGAGCu -3'
miRNA:   3'- -GCU---UCGCUUCaCCGA------CGCGUUGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 42118 0.74 0.378374
Target:  5'- aCGAggauAGCGucGU-GCUGCGCGACGAGg -3'
miRNA:   3'- -GCU----UCGCuuCAcCGACGCGUUGCUUg -5'
24123 3' -52.4 NC_005263.2 + 19855 0.74 0.387611
Target:  5'- aCGAuGCGAacaaGGUcacGGCgaGCGCGGCGAGCg -3'
miRNA:   3'- -GCUuCGCU----UCA---CCGa-CGCGUUGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 32001 0.73 0.406526
Target:  5'- uGuGGCgGGAGUGGCacugUGgGCGGCGAGCg -3'
miRNA:   3'- gCuUCG-CUUCACCG----ACgCGUUGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 21200 0.73 0.406526
Target:  5'- gCGgcGCGGgcgAGUGGgUGCGUuuCGAGCg -3'
miRNA:   3'- -GCuuCGCU---UCACCgACGCGuuGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 4079 0.73 0.416199
Target:  5'- aGAAGuCGAacGGUGcGUugUGCGCGACGAAUg -3'
miRNA:   3'- gCUUC-GCU--UCAC-CG--ACGCGUUGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 37380 0.72 0.446039
Target:  5'- uCGAGucuGCGucGcccUGGCUGCGCGACGuGCa -3'
miRNA:   3'- -GCUU---CGCuuC---ACCGACGCGUUGCuUG- -5'
24123 3' -52.4 NC_005263.2 + 30265 0.71 0.530907
Target:  5'- uCGucGGCGAAGc-GCUGCGCAAuCGGGCc -3'
miRNA:   3'- -GCu-UCGCUUCacCGACGCGUU-GCUUG- -5'
24123 3' -52.4 NC_005263.2 + 9448 0.7 0.553083
Target:  5'- uGAucuuGGCGAGGuUGGCgucgaUGCGCGACGcGGCu -3'
miRNA:   3'- gCU----UCGCUUC-ACCG-----ACGCGUUGC-UUG- -5'
24123 3' -52.4 NC_005263.2 + 39515 0.7 0.564276
Target:  5'- -aAGGCGAAGaUGGaagcgcgcgGCGUAACGGACg -3'
miRNA:   3'- gcUUCGCUUC-ACCga-------CGCGUUGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 35361 0.7 0.597037
Target:  5'- -cAGGUGAuccgcccugaucaGGUGGCgGCGCGGCuGAACa -3'
miRNA:   3'- gcUUCGCU-------------UCACCGaCGCGUUG-CUUG- -5'
24123 3' -52.4 NC_005263.2 + 12095 0.69 0.632347
Target:  5'- uCGucGCGGccUGGCaUGCGCAGCGGcgcGCg -3'
miRNA:   3'- -GCuuCGCUucACCG-ACGCGUUGCU---UG- -5'
24123 3' -52.4 NC_005263.2 + 41553 0.69 0.643752
Target:  5'- gCGgcGCGccGUGGCgGCGauGCGAGCu -3'
miRNA:   3'- -GCuuCGCuuCACCGaCGCguUGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 41342 0.69 0.655145
Target:  5'- aCGAGGCcGAGcucgcccGGC-GCGCGAUGGACg -3'
miRNA:   3'- -GCUUCGcUUCa------CCGaCGCGUUGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 24685 0.68 0.689142
Target:  5'- gGggGCGccGGUaacGGCgGCGCGcCGAACg -3'
miRNA:   3'- gCuuCGCu-UCA---CCGaCGCGUuGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 31022 0.68 0.689142
Target:  5'- uGcGGCGAGGcgcGGCgUGCGCugcuCGAGCa -3'
miRNA:   3'- gCuUCGCUUCa--CCG-ACGCGuu--GCUUG- -5'
24123 3' -52.4 NC_005263.2 + 33319 0.68 0.689142
Target:  5'- aCGAacGGCaaGAGGUaGGCgUGCGCGuCGGGCa -3'
miRNA:   3'- -GCU--UCG--CUUCA-CCG-ACGCGUuGCUUG- -5'
24123 3' -52.4 NC_005263.2 + 37975 0.68 0.700373
Target:  5'- cCGGcuGGCGcugaAGGUGGCg--GCAACGAACu -3'
miRNA:   3'- -GCU--UCGC----UUCACCGacgCGUUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.