Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 21200 | 0.73 | 0.406526 |
Target: 5'- gCGgcGCGGgcgAGUGGgUGCGUuuCGAGCg -3' miRNA: 3'- -GCuuCGCU---UCACCgACGCGuuGCUUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 42118 | 0.74 | 0.378374 |
Target: 5'- aCGAggauAGCGucGU-GCUGCGCGACGAGg -3' miRNA: 3'- -GCU----UCGCuuCAcCGACGCGUUGCUUg -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 33319 | 0.68 | 0.689142 |
Target: 5'- aCGAacGGCaaGAGGUaGGCgUGCGCGuCGGGCa -3' miRNA: 3'- -GCU--UCG--CUUCA-CCG-ACGCGUuGCUUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 31022 | 0.68 | 0.689142 |
Target: 5'- uGcGGCGAGGcgcGGCgUGCGCugcuCGAGCa -3' miRNA: 3'- gCuUCGCUUCa--CCG-ACGCGuu--GCUUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 12095 | 0.69 | 0.632347 |
Target: 5'- uCGucGCGGccUGGCaUGCGCAGCGGcgcGCg -3' miRNA: 3'- -GCuuCGCUucACCG-ACGCGUUGCU---UG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 39515 | 0.7 | 0.564276 |
Target: 5'- -aAGGCGAAGaUGGaagcgcgcgGCGUAACGGACg -3' miRNA: 3'- gcUUCGCUUC-ACCga-------CGCGUUGCUUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 47294 | 0.66 | 0.786588 |
Target: 5'- cCGAAGCGcAGUccGCUGU-CGACGGACu -3' miRNA: 3'- -GCUUCGCuUCAc-CGACGcGUUGCUUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 44841 | 0.67 | 0.763706 |
Target: 5'- gCGAGGCGAuacucgacgccUGuCUGCGCGGCGAucGCg -3' miRNA: 3'- -GCUUCGCUuc---------ACcGACGCGUUGCU--UG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 41342 | 0.69 | 0.655145 |
Target: 5'- aCGAGGCcGAGcucgcccGGC-GCGCGAUGGACg -3' miRNA: 3'- -GCUUCGcUUCa------CCGaCGCGUUGCUUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 9448 | 0.7 | 0.553083 |
Target: 5'- uGAucuuGGCGAGGuUGGCgucgaUGCGCGACGcGGCu -3' miRNA: 3'- gCU----UCGCUUC-ACCG-----ACGCGUUGC-UUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 37380 | 0.72 | 0.446039 |
Target: 5'- uCGAGucuGCGucGcccUGGCUGCGCGACGuGCa -3' miRNA: 3'- -GCUU---CGCuuC---ACCGACGCGUUGCuUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 29298 | 0.66 | 0.806668 |
Target: 5'- --cGGCGGccgGGUcGGCaUGCGCAucgcgcgcgGCGAGCa -3' miRNA: 3'- gcuUCGCU---UCA-CCG-ACGCGU---------UGCUUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 30265 | 0.71 | 0.530907 |
Target: 5'- uCGucGGCGAAGc-GCUGCGCAAuCGGGCc -3' miRNA: 3'- -GCu-UCGCUUCacCGACGCGUU-GCUUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 33989 | 0.68 | 0.700373 |
Target: 5'- aGcGGCGAGGccggccguguUGGCUGCGUcGCGGcgcGCg -3' miRNA: 3'- gCuUCGCUUC----------ACCGACGCGuUGCU---UG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 19855 | 0.74 | 0.387611 |
Target: 5'- aCGAuGCGAacaaGGUcacGGCgaGCGCGGCGAGCg -3' miRNA: 3'- -GCUuCGCU----UCA---CCGa-CGCGUUGCUUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 4079 | 0.73 | 0.416199 |
Target: 5'- aGAAGuCGAacGGUGcGUugUGCGCGACGAAUg -3' miRNA: 3'- gCUUC-GCU--UCAC-CG--ACGCGUUGCUUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 35361 | 0.7 | 0.597037 |
Target: 5'- -cAGGUGAuccgcccugaucaGGUGGCgGCGCGGCuGAACa -3' miRNA: 3'- gcUUCGCU-------------UCACCGaCGCGUUG-CUUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 41553 | 0.69 | 0.643752 |
Target: 5'- gCGgcGCGccGUGGCgGCGauGCGAGCu -3' miRNA: 3'- -GCuuCGCuuCACCGaCGCguUGCUUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 24685 | 0.68 | 0.689142 |
Target: 5'- gGggGCGccGGUaacGGCgGCGCGcCGAACg -3' miRNA: 3'- gCuuCGCu-UCA---CCGaCGCGUuGCUUG- -5' |
|||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 12235 | 0.67 | 0.744457 |
Target: 5'- aCGcGGCGAAGUauuuggGGCUGcCGCAGCc--- -3' miRNA: 3'- -GCuUCGCUUCA------CCGAC-GCGUUGcuug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home