Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 35242 | 0.66 | 0.789646 |
Target: 5'- uCGgcGCGGucgaccccucgaucaAGUGGCaguggaaUGCGCugcGCGAACu -3' miRNA: 3'- -GCuuCGCU---------------UCACCG-------ACGCGu--UGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 24685 | 0.68 | 0.689142 |
Target: 5'- gGggGCGccGGUaacGGCgGCGCGcCGAACg -3' miRNA: 3'- gCuuCGCu-UCA---CCGaCGCGUuGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 41553 | 0.69 | 0.643752 |
Target: 5'- gCGgcGCGccGUGGCgGCGauGCGAGCu -3' miRNA: 3'- -GCuuCGCuuCACCGaCGCguUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 35361 | 0.7 | 0.597037 |
Target: 5'- -cAGGUGAuccgcccugaucaGGUGGCgGCGCGGCuGAACa -3' miRNA: 3'- gcUUCGCU-------------UCACCGaCGCGUUG-CUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 4079 | 0.73 | 0.416199 |
Target: 5'- aGAAGuCGAacGGUGcGUugUGCGCGACGAAUg -3' miRNA: 3'- gCUUC-GCU--UCAC-CG--ACGCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 32001 | 0.73 | 0.406526 |
Target: 5'- uGuGGCgGGAGUGGCacugUGgGCGGCGAGCg -3' miRNA: 3'- gCuUCG-CUUCACCG----ACgCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 24455 | 0.74 | 0.35156 |
Target: 5'- aCGGcacGGCGAAG-GGUUuccuacGCGCGACGAGCu -3' miRNA: 3'- -GCU---UCGCUUCaCCGA------CGCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 9186 | 0.76 | 0.265081 |
Target: 5'- gCGAAGCGAcGcGGgUGCGCAaACGGGCg -3' miRNA: 3'- -GCUUCGCUuCaCCgACGCGU-UGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 42642 | 1.11 | 0.00109 |
Target: 5'- cCGAAGCGAAGUGGCUGCGCAACGAACa -3' miRNA: 3'- -GCUUCGCUUCACCGACGCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 37975 | 0.68 | 0.700373 |
Target: 5'- cCGGcuGGCGcugaAGGUGGCg--GCAACGAACu -3' miRNA: 3'- -GCU--UCGC----UUCACCGacgCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 29605 | 0.67 | 0.733588 |
Target: 5'- cCGAucGCGAGGc-GUUGCGCuuCGGACg -3' miRNA: 3'- -GCUu-CGCUUCacCGACGCGuuGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 13537 | 0.66 | 0.786588 |
Target: 5'- -cAAGCGAcgcugaccGUGGCUGCGCcaAAUGAuACg -3' miRNA: 3'- gcUUCGCUu-------CACCGACGCG--UUGCU-UG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 36497 | 0.67 | 0.776283 |
Target: 5'- uCGAAgGCGAAGU-GCUGCGCcACu--- -3' miRNA: 3'- -GCUU-CGCUUCAcCGACGCGuUGcuug -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 27960 | 0.67 | 0.776283 |
Target: 5'- aCGgcGCGGA-UGGCccagagcugcUGCGCG-CGAGCg -3' miRNA: 3'- -GCuuCGCUUcACCG----------ACGCGUuGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 38349 | 0.67 | 0.776283 |
Target: 5'- gGAuGCGAAGUcGG-UGCGCAccGCGAu- -3' miRNA: 3'- gCUuCGCUUCA-CCgACGCGU--UGCUug -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 24548 | 0.67 | 0.776283 |
Target: 5'- gCGgcGCGGgcggcGGcGGCUGCGCcACGGucgGCa -3' miRNA: 3'- -GCuuCGCU-----UCaCCGACGCGuUGCU---UG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 12235 | 0.67 | 0.744457 |
Target: 5'- aCGcGGCGAAGUauuuggGGCUGcCGCAGCc--- -3' miRNA: 3'- -GCuUCGCUUCA------CCGAC-GCGUUGcuug -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 10152 | 0.67 | 0.744457 |
Target: 5'- aCGAGGCGGgcAGcuUGGCgucgccgagaGCGCGaaucGCGAGCa -3' miRNA: 3'- -GCUUCGCU--UC--ACCGa---------CGCGU----UGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 45839 | 0.67 | 0.733588 |
Target: 5'- cCGAcGGCGAAcgcGCUGCGCu-CGAACa -3' miRNA: 3'- -GCU-UCGCUUcacCGACGCGuuGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 29298 | 0.66 | 0.806668 |
Target: 5'- --cGGCGGccgGGUcGGCaUGCGCAucgcgcgcgGCGAGCa -3' miRNA: 3'- gcuUCGCU---UCA-CCG-ACGCGU---------UGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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