miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24123 5' -50.8 NC_005263.2 + 36943 0.68 0.811717
Target:  5'- cGCGUgUCGCAGccgGCcAGCuAgGCUGCg -3'
miRNA:   3'- -CGCA-AGCGUCua-CGaUUGcUgCGACG- -5'
24123 5' -50.8 NC_005263.2 + 9557 0.68 0.811717
Target:  5'- gGCGcUCGCGGcuUGCcaGGCGGCGC-GCu -3'
miRNA:   3'- -CGCaAGCGUCu-ACGa-UUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 25387 0.68 0.801847
Target:  5'- aCGUUCgGCAGcUGC--GCGAC-CUGCa -3'
miRNA:   3'- cGCAAG-CGUCuACGauUGCUGcGACG- -5'
24123 5' -50.8 NC_005263.2 + 2858 0.68 0.791786
Target:  5'- aGCG-UCGCAGcguucGCgAACGACGUcGCa -3'
miRNA:   3'- -CGCaAGCGUCua---CGaUUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 17150 0.68 0.791786
Target:  5'- aGCGgucgacgUCGCGGuguucgGCUGGCaGACGaUUGCg -3'
miRNA:   3'- -CGCa------AGCGUCua----CGAUUG-CUGC-GACG- -5'
24123 5' -50.8 NC_005263.2 + 30238 0.68 0.789752
Target:  5'- uCGUUCGCGGcgaagcGUGCgcgguagucgucGGCGaaGCGCUGCg -3'
miRNA:   3'- cGCAAGCGUC------UACGa-----------UUGC--UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 26144 0.69 0.781545
Target:  5'- uGCGcgCGCAGcAUGCcuGCGuCGUUGUc -3'
miRNA:   3'- -CGCaaGCGUC-UACGauUGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 18273 0.69 0.781545
Target:  5'- gGCGUUCcggGC-GAUGCgcucgucguGCG-CGCUGCa -3'
miRNA:   3'- -CGCAAG---CGuCUACGau-------UGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 12565 0.69 0.781545
Target:  5'- uGCGUUUGCGaacGUGCUGcCGAuCGCcgGCg -3'
miRNA:   3'- -CGCAAGCGUc--UACGAUuGCU-GCGa-CG- -5'
24123 5' -50.8 NC_005263.2 + 20116 0.69 0.771137
Target:  5'- ----gCGCGGAUGCgcaGGCGuACGCUcGCg -3'
miRNA:   3'- cgcaaGCGUCUACGa--UUGC-UGCGA-CG- -5'
24123 5' -50.8 NC_005263.2 + 33128 0.69 0.764817
Target:  5'- aCGUcacgCGCAGAUcGCUGccgccagccaugagcGCGGCGCcuUGCa -3'
miRNA:   3'- cGCAa---GCGUCUA-CGAU---------------UGCUGCG--ACG- -5'
24123 5' -50.8 NC_005263.2 + 16403 0.69 0.754167
Target:  5'- cCGgcaUCGCGGGUGCgguacucggcguCGGCGCUGg -3'
miRNA:   3'- cGCa--AGCGUCUACGauu---------GCUGCGACg -5'
24123 5' -50.8 NC_005263.2 + 30451 0.69 0.749869
Target:  5'- aGCGUgagCGCGGcgGCcuuCG-CGUUGCg -3'
miRNA:   3'- -CGCAa--GCGUCuaCGauuGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 41156 0.69 0.749869
Target:  5'- gGCGUUCGC-GcgGCgugGGCGgccgucgucgauACGUUGCg -3'
miRNA:   3'- -CGCAAGCGuCuaCGa--UUGC------------UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 20691 0.69 0.739035
Target:  5'- cGCGacgCGaCAGcacucGCU-ACGACGCUGCa -3'
miRNA:   3'- -CGCaa-GC-GUCua---CGAuUGCUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 2649 0.69 0.739035
Target:  5'- aCGUUCGCgccgggcucgAGGUGCaGGCGuGCGUUGUg -3'
miRNA:   3'- cGCAAGCG----------UCUACGaUUGC-UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 10488 0.69 0.739035
Target:  5'- cGCcg-CGCAGGUGCUugccgucgaAGCGcACGUUGUg -3'
miRNA:   3'- -CGcaaGCGUCUACGA---------UUGC-UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 35541 0.69 0.739035
Target:  5'- gGCGgcgCGCGGGcggGCgcuACGGCGCcGCc -3'
miRNA:   3'- -CGCaa-GCGUCUa--CGau-UGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 17032 0.7 0.717031
Target:  5'- aCGaugUCGCAGcgGCUGgugGCGGCGUgaacgGCu -3'
miRNA:   3'- cGCa--AGCGUCuaCGAU---UGCUGCGa----CG- -5'
24123 5' -50.8 NC_005263.2 + 42682 0.7 0.705887
Target:  5'- aCGgauaCGguGAUGCUGAUcgcagGGCGUUGCa -3'
miRNA:   3'- cGCaa--GCguCUACGAUUG-----CUGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.