miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24123 5' -50.8 NC_005263.2 + 2858 0.68 0.791786
Target:  5'- aGCG-UCGCAGcguucGCgAACGACGUcGCa -3'
miRNA:   3'- -CGCaAGCGUCua---CGaUUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 25387 0.68 0.801847
Target:  5'- aCGUUCgGCAGcUGC--GCGAC-CUGCa -3'
miRNA:   3'- cGCAAG-CGUCuACGauUGCUGcGACG- -5'
24123 5' -50.8 NC_005263.2 + 9557 0.68 0.811717
Target:  5'- gGCGcUCGCGGcuUGCcaGGCGGCGC-GCu -3'
miRNA:   3'- -CGCaAGCGUCu-ACGa-UUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 36943 0.68 0.811717
Target:  5'- cGCGUgUCGCAGccgGCcAGCuAgGCUGCg -3'
miRNA:   3'- -CGCA-AGCGUCua-CGaUUGcUgCGACG- -5'
24123 5' -50.8 NC_005263.2 + 16593 0.68 0.811717
Target:  5'- cGCGUUCGCcGG-GCUcGCG-CGCgaGCa -3'
miRNA:   3'- -CGCAAGCGuCUaCGAuUGCuGCGa-CG- -5'
24123 5' -50.8 NC_005263.2 + 28949 0.68 0.811717
Target:  5'- cGCGccgGCGGAUGCacggucacGACGACGC-GCa -3'
miRNA:   3'- -CGCaagCGUCUACGa-------UUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 22533 0.68 0.830836
Target:  5'- aGCGUgacgggcggCGCGGAcGCcGACGucGCGCUcGCg -3'
miRNA:   3'- -CGCAa--------GCGUCUaCGaUUGC--UGCGA-CG- -5'
24123 5' -50.8 NC_005263.2 + 7056 0.68 0.830836
Target:  5'- cGCGccaaUgGCAGGUGCga---GCGCUGCg -3'
miRNA:   3'- -CGCa---AgCGUCUACGauugcUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 1123 0.67 0.840062
Target:  5'- cGCGaaguccgCGCc-GUGCUGcgcACGGCGUUGCa -3'
miRNA:   3'- -CGCaa-----GCGucUACGAU---UGCUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 30376 0.67 0.849053
Target:  5'- aGCGcUUCGgGGAUGUgcGCGAuCGCUuCg -3'
miRNA:   3'- -CGC-AAGCgUCUACGauUGCU-GCGAcG- -5'
24123 5' -50.8 NC_005263.2 + 24598 0.67 0.849053
Target:  5'- uCGggCGCAGgcGgUGGCGGCGCa-- -3'
miRNA:   3'- cGCaaGCGUCuaCgAUUGCUGCGacg -5'
24123 5' -50.8 NC_005263.2 + 13075 0.67 0.849053
Target:  5'- gGCGUgucUGCcGGUGUcgGACGGCaGCUGUa -3'
miRNA:   3'- -CGCAa--GCGuCUACGa-UUGCUG-CGACG- -5'
24123 5' -50.8 NC_005263.2 + 6578 0.67 0.857798
Target:  5'- cGCGUuugCGCAGgcGCaagUAGuCGACGCgaucGCg -3'
miRNA:   3'- -CGCAa--GCGUCuaCG---AUU-GCUGCGa---CG- -5'
24123 5' -50.8 NC_005263.2 + 34048 0.67 0.857798
Target:  5'- cGCGgcgCGCucaAUGCgcuCGACGCgGCg -3'
miRNA:   3'- -CGCaa-GCGuc-UACGauuGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 33573 0.67 0.857798
Target:  5'- cGCGUcuacaUCGaaaaAGcgGCgAACGGCGCcGCg -3'
miRNA:   3'- -CGCA-----AGCg---UCuaCGaUUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 26920 0.67 0.861225
Target:  5'- cGCGgaUGCGGAacaGCUcgccacgcaguugauGACGuCGCUGCc -3'
miRNA:   3'- -CGCaaGCGUCUa--CGA---------------UUGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 17625 0.67 0.866288
Target:  5'- cGCGggUCGCGcaucGAUGCguuccguCGGCGCUacgGCa -3'
miRNA:   3'- -CGCa-AGCGU----CUACGauu----GCUGCGA---CG- -5'
24123 5' -50.8 NC_005263.2 + 19958 0.67 0.866288
Target:  5'- uGCGcUCGC--GUGCU--CGGCGCUGg -3'
miRNA:   3'- -CGCaAGCGucUACGAuuGCUGCGACg -5'
24123 5' -50.8 NC_005263.2 + 46494 0.67 0.866288
Target:  5'- cGCGUUCGaccCGGAUGCggucgaaAACGGCGaauacaGCa -3'
miRNA:   3'- -CGCAAGC---GUCUACGa------UUGCUGCga----CG- -5'
24123 5' -50.8 NC_005263.2 + 40039 0.67 0.872076
Target:  5'- cGCGUUCGUAGGa-CUGaucacggaacucgcGCGGCGCcacgGCg -3'
miRNA:   3'- -CGCAAGCGUCUacGAU--------------UGCUGCGa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.