miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24123 5' -50.8 NC_005263.2 + 32231 0.71 0.660658
Target:  5'- aGCGUUCGCA-AUGCUcgUGAaaCUGCu -3'
miRNA:   3'- -CGCAAGCGUcUACGAuuGCUgcGACG- -5'
24123 5' -50.8 NC_005263.2 + 21184 0.71 0.672038
Target:  5'- cCGgaCGCGGAcGCgcGCGGCGCggGCg -3'
miRNA:   3'- cGCaaGCGUCUaCGauUGCUGCGa-CG- -5'
24123 5' -50.8 NC_005263.2 + 23967 0.71 0.67658
Target:  5'- cGCGUUCGCAaccgcgacgcaaaucGGcgGCUAcccgaaagGCGccGCGCUGCa -3'
miRNA:   3'- -CGCAAGCGU---------------CUa-CGAU--------UGC--UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 26192 0.7 0.694665
Target:  5'- uGCGgccgCGCGGcgGCcgcGCGAUGCgGCg -3'
miRNA:   3'- -CGCaa--GCGUCuaCGau-UGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 42682 0.7 0.705887
Target:  5'- aCGgauaCGguGAUGCUGAUcgcagGGCGUUGCa -3'
miRNA:   3'- cGCaa--GCguCUACGAUUG-----CUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 17032 0.7 0.717031
Target:  5'- aCGaugUCGCAGcgGCUGgugGCGGCGUgaacgGCu -3'
miRNA:   3'- cGCa--AGCGUCuaCGAU---UGCUGCGa----CG- -5'
24123 5' -50.8 NC_005263.2 + 20691 0.69 0.739035
Target:  5'- cGCGacgCGaCAGcacucGCU-ACGACGCUGCa -3'
miRNA:   3'- -CGCaa-GC-GUCua---CGAuUGCUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 2649 0.69 0.739035
Target:  5'- aCGUUCGCgccgggcucgAGGUGCaGGCGuGCGUUGUg -3'
miRNA:   3'- cGCAAGCG----------UCUACGaUUGC-UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 35541 0.69 0.739035
Target:  5'- gGCGgcgCGCGGGcggGCgcuACGGCGCcGCc -3'
miRNA:   3'- -CGCaa-GCGUCUa--CGau-UGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 10488 0.69 0.739035
Target:  5'- cGCcg-CGCAGGUGCUugccgucgaAGCGcACGUUGUg -3'
miRNA:   3'- -CGcaaGCGUCUACGA---------UUGC-UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 41156 0.69 0.749869
Target:  5'- gGCGUUCGC-GcgGCgugGGCGgccgucgucgauACGUUGCg -3'
miRNA:   3'- -CGCAAGCGuCuaCGa--UUGC------------UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 30451 0.69 0.749869
Target:  5'- aGCGUgagCGCGGcgGCcuuCG-CGUUGCg -3'
miRNA:   3'- -CGCAa--GCGUCuaCGauuGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 16403 0.69 0.754167
Target:  5'- cCGgcaUCGCGGGUGCgguacucggcguCGGCGCUGg -3'
miRNA:   3'- cGCa--AGCGUCUACGauu---------GCUGCGACg -5'
24123 5' -50.8 NC_005263.2 + 33128 0.69 0.764817
Target:  5'- aCGUcacgCGCAGAUcGCUGccgccagccaugagcGCGGCGCcuUGCa -3'
miRNA:   3'- cGCAa---GCGUCUA-CGAU---------------UGCUGCG--ACG- -5'
24123 5' -50.8 NC_005263.2 + 20116 0.69 0.771137
Target:  5'- ----gCGCGGAUGCgcaGGCGuACGCUcGCg -3'
miRNA:   3'- cgcaaGCGUCUACGa--UUGC-UGCGA-CG- -5'
24123 5' -50.8 NC_005263.2 + 26144 0.69 0.781545
Target:  5'- uGCGcgCGCAGcAUGCcuGCGuCGUUGUc -3'
miRNA:   3'- -CGCaaGCGUC-UACGauUGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 12565 0.69 0.781545
Target:  5'- uGCGUUUGCGaacGUGCUGcCGAuCGCcgGCg -3'
miRNA:   3'- -CGCAAGCGUc--UACGAUuGCU-GCGa-CG- -5'
24123 5' -50.8 NC_005263.2 + 18273 0.69 0.781545
Target:  5'- gGCGUUCcggGC-GAUGCgcucgucguGCG-CGCUGCa -3'
miRNA:   3'- -CGCAAG---CGuCUACGau-------UGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 30238 0.68 0.789752
Target:  5'- uCGUUCGCGGcgaagcGUGCgcgguagucgucGGCGaaGCGCUGCg -3'
miRNA:   3'- cGCAAGCGUC------UACGa-----------UUGC--UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 17150 0.68 0.791786
Target:  5'- aGCGgucgacgUCGCGGuguucgGCUGGCaGACGaUUGCg -3'
miRNA:   3'- -CGCa------AGCGUCua----CGAUUG-CUGC-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.