miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24123 5' -50.8 NC_005263.2 + 42676 1.14 0.001124
Target:  5'- cGCGUUCGCAGAUGCUAACGACGCUGCc -3'
miRNA:   3'- -CGCAAGCGUCUACGAUUGCUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 1445 0.79 0.253991
Target:  5'- cGCGaggcUUCGCGGc-GCUcGCGGCGCUGCa -3'
miRNA:   3'- -CGC----AAGCGUCuaCGAuUGCUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 15862 0.79 0.253991
Target:  5'- cGCGaUUCaGCAGAUGCaGGCGAacaaccCGCUGCa -3'
miRNA:   3'- -CGC-AAG-CGUCUACGaUUGCU------GCGACG- -5'
24123 5' -50.8 NC_005263.2 + 12544 0.79 0.253991
Target:  5'- aCGUUCGCGGcgGCcGGCGGCGCcGUa -3'
miRNA:   3'- cGCAAGCGUCuaCGaUUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 18681 0.76 0.355239
Target:  5'- cCGUUCGCGcagcaaGCUAGCGGCGCgGCa -3'
miRNA:   3'- cGCAAGCGUcua---CGAUUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 18620 0.76 0.358768
Target:  5'- gGCGUUCGCggcAGGUggcaacccgggcgccGCUGGCGguACGCUGCc -3'
miRNA:   3'- -CGCAAGCG---UCUA---------------CGAUUGC--UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 45382 0.75 0.450544
Target:  5'- aCGUUCGUAcguGAUGCacGCG-CGCUGCg -3'
miRNA:   3'- cGCAAGCGU---CUACGauUGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 24934 0.74 0.460831
Target:  5'- cCGUUCGguGGcgGCgGACGGCGgUGCg -3'
miRNA:   3'- cGCAAGCguCUa-CGaUUGCUGCgACG- -5'
24123 5' -50.8 NC_005263.2 + 24960 0.74 0.460831
Target:  5'- cGCgGUUCGCAGAUcgGCaacACGAUGCUGg -3'
miRNA:   3'- -CG-CAAGCGUCUA--CGau-UGCUGCGACg -5'
24123 5' -50.8 NC_005263.2 + 22834 0.74 0.492412
Target:  5'- cGCGcgCGCGGAUcggcaugcaGCUGAuCGGUGCUGCg -3'
miRNA:   3'- -CGCaaGCGUCUA---------CGAUU-GCUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 35757 0.73 0.51401
Target:  5'- cGCGggCGCGGuuacugcgGCUGGCGGCG-UGCc -3'
miRNA:   3'- -CGCaaGCGUCua------CGAUUGCUGCgACG- -5'
24123 5' -50.8 NC_005263.2 + 17418 0.73 0.51401
Target:  5'- gGCGgugUCGCAGGUGCaacAGCGGCcaGCUcGCc -3'
miRNA:   3'- -CGCa--AGCGUCUACGa--UUGCUG--CGA-CG- -5'
24123 5' -50.8 NC_005263.2 + 9190 0.73 0.524953
Target:  5'- aGCGa-CGCGGGUGCgcaaacgGGCGGCGCUcGUa -3'
miRNA:   3'- -CGCaaGCGUCUACGa------UUGCUGCGA-CG- -5'
24123 5' -50.8 NC_005263.2 + 21864 0.73 0.535984
Target:  5'- cGCGUUCGCgacggccggcaAGAcGCUaucgaccgaguuGACGACGCcGCa -3'
miRNA:   3'- -CGCAAGCG-----------UCUaCGA------------UUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 24143 0.72 0.580824
Target:  5'- uGCG-UCGCGGuUGCgAACG-CGCUGUc -3'
miRNA:   3'- -CGCaAGCGUCuACGaUUGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 40286 0.72 0.608116
Target:  5'- cGCGguugCGCAGAUGCU--CGGCGUauaacgcguuacccgUGCu -3'
miRNA:   3'- -CGCaa--GCGUCUACGAuuGCUGCG---------------ACG- -5'
24123 5' -50.8 NC_005263.2 + 21120 0.72 0.614965
Target:  5'- gGCGca-GCGGGUGCUGcuCGGCGC-GCa -3'
miRNA:   3'- -CGCaagCGUCUACGAUu-GCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 45251 0.71 0.637823
Target:  5'- uCGUUCGCGaacGCU-GCGACGCUGa -3'
miRNA:   3'- cGCAAGCGUcuaCGAuUGCUGCGACg -5'
24123 5' -50.8 NC_005263.2 + 30845 0.71 0.637823
Target:  5'- cGgGUUCGCcGAUGUUc-CGACGCgGCu -3'
miRNA:   3'- -CgCAAGCGuCUACGAuuGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 13971 0.71 0.659518
Target:  5'- cGCGUUCGCGGGgcguguaguUGCUcacguccacuucgAACuGACGCgcgagGCg -3'
miRNA:   3'- -CGCAAGCGUCU---------ACGA-------------UUG-CUGCGa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.