miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24123 5' -50.8 NC_005263.2 + 1123 0.67 0.840062
Target:  5'- cGCGaaguccgCGCc-GUGCUGcgcACGGCGUUGCa -3'
miRNA:   3'- -CGCaa-----GCGucUACGAU---UGCUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 1445 0.79 0.253991
Target:  5'- cGCGaggcUUCGCGGc-GCUcGCGGCGCUGCa -3'
miRNA:   3'- -CGC----AAGCGUCuaCGAuUGCUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 2012 0.66 0.89755
Target:  5'- cGCGccaaaucCGCAGcgGCgcaUAACGGCGCccGCu -3'
miRNA:   3'- -CGCaa-----GCGUCuaCG---AUUGCUGCGa-CG- -5'
24123 5' -50.8 NC_005263.2 + 2649 0.69 0.739035
Target:  5'- aCGUUCGCgccgggcucgAGGUGCaGGCGuGCGUUGUg -3'
miRNA:   3'- cGCAAGCG----------UCUACGaUUGC-UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 2858 0.68 0.791786
Target:  5'- aGCG-UCGCAGcguucGCgAACGACGUcGCa -3'
miRNA:   3'- -CGCaAGCGUCua---CGaUUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 4171 0.66 0.911476
Target:  5'- cGCGccgCGCucGUGCUGcaGCGGCGUgUGCu -3'
miRNA:   3'- -CGCaa-GCGucUACGAU--UGCUGCG-ACG- -5'
24123 5' -50.8 NC_005263.2 + 4856 0.66 0.882473
Target:  5'- cGCGcgCGCc-GUGCcGAUGcCGCUGCc -3'
miRNA:   3'- -CGCaaGCGucUACGaUUGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 6578 0.67 0.857798
Target:  5'- cGCGUuugCGCAGgcGCaagUAGuCGACGCgaucGCg -3'
miRNA:   3'- -CGCAa--GCGUCuaCG---AUU-GCUGCGa---CG- -5'
24123 5' -50.8 NC_005263.2 + 7056 0.68 0.830836
Target:  5'- cGCGccaaUgGCAGGUGCga---GCGCUGCg -3'
miRNA:   3'- -CGCa---AgCGUCUACGauugcUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 7430 0.66 0.887879
Target:  5'- cGCGUcgaGCAGGUaGCgcACGAaugccaaggcuuccUGCUGCa -3'
miRNA:   3'- -CGCAag-CGUCUA-CGauUGCU--------------GCGACG- -5'
24123 5' -50.8 NC_005263.2 + 9190 0.73 0.524953
Target:  5'- aGCGa-CGCGGGUGCgcaaacgGGCGGCGCUcGUa -3'
miRNA:   3'- -CGCaaGCGUCUACGa------UUGCUGCGA-CG- -5'
24123 5' -50.8 NC_005263.2 + 9460 0.66 0.882473
Target:  5'- -gGUUgGCGucGAUGC--GCGACGCgGCu -3'
miRNA:   3'- cgCAAgCGU--CUACGauUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 9557 0.68 0.811717
Target:  5'- gGCGcUCGCGGcuUGCcaGGCGGCGC-GCu -3'
miRNA:   3'- -CGCaAGCGUCu-ACGa-UUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 10488 0.69 0.739035
Target:  5'- cGCcg-CGCAGGUGCUugccgucgaAGCGcACGUUGUg -3'
miRNA:   3'- -CGcaaGCGUCUACGA---------UUGC-UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 12544 0.79 0.253991
Target:  5'- aCGUUCGCGGcgGCcGGCGGCGCcGUa -3'
miRNA:   3'- cGCAAGCGUCuaCGaUUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 12565 0.69 0.781545
Target:  5'- uGCGUUUGCGaacGUGCUGcCGAuCGCcgGCg -3'
miRNA:   3'- -CGCAAGCGUc--UACGAUuGCU-GCGa-CG- -5'
24123 5' -50.8 NC_005263.2 + 13075 0.67 0.849053
Target:  5'- gGCGUgucUGCcGGUGUcgGACGGCaGCUGUa -3'
miRNA:   3'- -CGCAa--GCGuCUACGa-UUGCUG-CGACG- -5'
24123 5' -50.8 NC_005263.2 + 13522 0.67 0.874516
Target:  5'- aCGUcCGCGaguaaucaagcGAcGCUGAcCGugGCUGCg -3'
miRNA:   3'- cGCAaGCGU-----------CUaCGAUU-GCugCGACG- -5'
24123 5' -50.8 NC_005263.2 + 13971 0.71 0.659518
Target:  5'- cGCGUUCGCGGGgcguguaguUGCUcacguccacuucgAACuGACGCgcgagGCg -3'
miRNA:   3'- -CGCAAGCGUCU---------ACGA-------------UUG-CUGCGa----CG- -5'
24123 5' -50.8 NC_005263.2 + 15862 0.79 0.253991
Target:  5'- cGCGaUUCaGCAGAUGCaGGCGAacaaccCGCUGCa -3'
miRNA:   3'- -CGC-AAG-CGUCUACGaUUGCU------GCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.