miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24123 5' -50.8 NC_005263.2 + 12544 0.79 0.253991
Target:  5'- aCGUUCGCGGcgGCcGGCGGCGCcGUa -3'
miRNA:   3'- cGCAAGCGUCuaCGaUUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 9557 0.68 0.811717
Target:  5'- gGCGcUCGCGGcuUGCcaGGCGGCGC-GCu -3'
miRNA:   3'- -CGCaAGCGUCu-ACGa-UUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 1123 0.67 0.840062
Target:  5'- cGCGaaguccgCGCc-GUGCUGcgcACGGCGUUGCa -3'
miRNA:   3'- -CGCaa-----GCGucUACGAU---UGCUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 28712 0.65 0.916072
Target:  5'- cGCGUUgccguacugcgcgcCGCcGAgGCUGACGGCaaUGCg -3'
miRNA:   3'- -CGCAA--------------GCGuCUaCGAUUGCUGcgACG- -5'
24123 5' -50.8 NC_005263.2 + 35757 0.73 0.51401
Target:  5'- cGCGggCGCGGuuacugcgGCUGGCGGCG-UGCc -3'
miRNA:   3'- -CGCaaGCGUCua------CGAUUGCUGCgACG- -5'
24123 5' -50.8 NC_005263.2 + 24143 0.72 0.580824
Target:  5'- uGCG-UCGCGGuUGCgAACG-CGCUGUc -3'
miRNA:   3'- -CGCaAGCGUCuACGaUUGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 13971 0.71 0.659518
Target:  5'- cGCGUUCGCGGGgcguguaguUGCUcacguccacuucgAACuGACGCgcgagGCg -3'
miRNA:   3'- -CGCAAGCGUCU---------ACGA-------------UUG-CUGCGa----CG- -5'
24123 5' -50.8 NC_005263.2 + 21184 0.71 0.672038
Target:  5'- cCGgaCGCGGAcGCgcGCGGCGCggGCg -3'
miRNA:   3'- cGCaaGCGUCUaCGauUGCUGCGa-CG- -5'
24123 5' -50.8 NC_005263.2 + 33128 0.69 0.764817
Target:  5'- aCGUcacgCGCAGAUcGCUGccgccagccaugagcGCGGCGCcuUGCa -3'
miRNA:   3'- cGCAa---GCGUCUA-CGAU---------------UGCUGCG--ACG- -5'
24123 5' -50.8 NC_005263.2 + 25387 0.68 0.801847
Target:  5'- aCGUUCgGCAGcUGC--GCGAC-CUGCa -3'
miRNA:   3'- cGCAAG-CGUCuACGauUGCUGcGACG- -5'
24123 5' -50.8 NC_005263.2 + 18273 0.69 0.781545
Target:  5'- gGCGUUCcggGC-GAUGCgcucgucguGCG-CGCUGCa -3'
miRNA:   3'- -CGCAAG---CGuCUACGau-------UGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 10488 0.69 0.739035
Target:  5'- cGCcg-CGCAGGUGCUugccgucgaAGCGcACGUUGUg -3'
miRNA:   3'- -CGcaaGCGUCUACGA---------UUGC-UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 18681 0.76 0.355239
Target:  5'- cCGUUCGCGcagcaaGCUAGCGGCGCgGCa -3'
miRNA:   3'- cGCAAGCGUcua---CGAUUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 30238 0.68 0.789752
Target:  5'- uCGUUCGCGGcgaagcGUGCgcgguagucgucGGCGaaGCGCUGCg -3'
miRNA:   3'- cGCAAGCGUC------UACGa-----------UUGC--UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 18620 0.76 0.358768
Target:  5'- gGCGUUCGCggcAGGUggcaacccgggcgccGCUGGCGguACGCUGCc -3'
miRNA:   3'- -CGCAAGCG---UCUA---------------CGAUUGC--UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 42682 0.7 0.705887
Target:  5'- aCGgauaCGguGAUGCUGAUcgcagGGCGUUGCa -3'
miRNA:   3'- cGCaa--GCguCUACGAUUG-----CUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 2858 0.68 0.791786
Target:  5'- aGCG-UCGCAGcguucGCgAACGACGUcGCa -3'
miRNA:   3'- -CGCaAGCGUCua---CGaUUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 7056 0.68 0.830836
Target:  5'- cGCGccaaUgGCAGGUGCga---GCGCUGCg -3'
miRNA:   3'- -CGCa---AgCGUCUACGauugcUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 45382 0.75 0.450544
Target:  5'- aCGUUCGUAcguGAUGCacGCG-CGCUGCg -3'
miRNA:   3'- cGCAAGCGU---CUACGauUGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 21120 0.72 0.614965
Target:  5'- gGCGca-GCGGGUGCUGcuCGGCGC-GCa -3'
miRNA:   3'- -CGCaagCGUCUACGAUu-GCUGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.