miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24123 5' -50.8 NC_005263.2 + 28949 0.68 0.811717
Target:  5'- cGCGccgGCGGAUGCacggucacGACGACGC-GCa -3'
miRNA:   3'- -CGCaagCGUCUACGa-------UUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 33573 0.67 0.857798
Target:  5'- cGCGUcuacaUCGaaaaAGcgGCgAACGGCGCcGCg -3'
miRNA:   3'- -CGCA-----AGCg---UCuaCGaUUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 34048 0.67 0.857798
Target:  5'- cGCGgcgCGCucaAUGCgcuCGACGCgGCg -3'
miRNA:   3'- -CGCaa-GCGuc-UACGauuGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 30376 0.67 0.849053
Target:  5'- aGCGcUUCGgGGAUGUgcGCGAuCGCUuCg -3'
miRNA:   3'- -CGC-AAGCgUCUACGauUGCU-GCGAcG- -5'
24123 5' -50.8 NC_005263.2 + 13075 0.67 0.849053
Target:  5'- gGCGUgucUGCcGGUGUcgGACGGCaGCUGUa -3'
miRNA:   3'- -CGCAa--GCGuCUACGa-UUGCUG-CGACG- -5'
24123 5' -50.8 NC_005263.2 + 24598 0.67 0.849053
Target:  5'- uCGggCGCAGgcGgUGGCGGCGCa-- -3'
miRNA:   3'- cGCaaGCGUCuaCgAUUGCUGCGacg -5'
24123 5' -50.8 NC_005263.2 + 22533 0.68 0.830836
Target:  5'- aGCGUgacgggcggCGCGGAcGCcGACGucGCGCUcGCg -3'
miRNA:   3'- -CGCAa--------GCGUCUaCGaUUGC--UGCGA-CG- -5'
24123 5' -50.8 NC_005263.2 + 36943 0.68 0.811717
Target:  5'- cGCGUgUCGCAGccgGCcAGCuAgGCUGCg -3'
miRNA:   3'- -CGCA-AGCGUCua-CGaUUGcUgCGACG- -5'
24123 5' -50.8 NC_005263.2 + 16593 0.68 0.811717
Target:  5'- cGCGUUCGCcGG-GCUcGCG-CGCgaGCa -3'
miRNA:   3'- -CGCAAGCGuCUaCGAuUGCuGCGa-CG- -5'
24123 5' -50.8 NC_005263.2 + 46494 0.67 0.866288
Target:  5'- cGCGUUCGaccCGGAUGCggucgaaAACGGCGaauacaGCa -3'
miRNA:   3'- -CGCAAGC---GUCUACGa------UUGCUGCga----CG- -5'
24123 5' -50.8 NC_005263.2 + 17625 0.67 0.866288
Target:  5'- cGCGggUCGCGcaucGAUGCguuccguCGGCGCUacgGCa -3'
miRNA:   3'- -CGCa-AGCGU----CUACGauu----GCUGCGA---CG- -5'
24123 5' -50.8 NC_005263.2 + 13522 0.67 0.874516
Target:  5'- aCGUcCGCGaguaaucaagcGAcGCUGAcCGugGCUGCg -3'
miRNA:   3'- cGCAaGCGU-----------CUaCGAUU-GCugCGACG- -5'
24123 5' -50.8 NC_005263.2 + 21628 0.66 0.911476
Target:  5'- ----gCGCAG-UGC-GGCGACGCgcgGCg -3'
miRNA:   3'- cgcaaGCGUCuACGaUUGCUGCGa--CG- -5'
24123 5' -50.8 NC_005263.2 + 19088 0.66 0.904659
Target:  5'- uGCGUcUUGCAGG-GCUGGcCGAUGUcgaauUGCu -3'
miRNA:   3'- -CGCA-AGCGUCUaCGAUU-GCUGCG-----ACG- -5'
24123 5' -50.8 NC_005263.2 + 43921 0.66 0.904659
Target:  5'- ----gCGCAGAaGCacACGcCGCUGCa -3'
miRNA:   3'- cgcaaGCGUCUaCGauUGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 2012 0.66 0.89755
Target:  5'- cGCGccaaaucCGCAGcgGCgcaUAACGGCGCccGCu -3'
miRNA:   3'- -CGCaa-----GCGUCuaCG---AUUGCUGCGa-CG- -5'
24123 5' -50.8 NC_005263.2 + 29583 0.66 0.895361
Target:  5'- cGCGcUCGCGG-UGUcGACGccgccgaucgcgagGCGUUGCg -3'
miRNA:   3'- -CGCaAGCGUCuACGaUUGC--------------UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 46566 0.66 0.890154
Target:  5'- cGUGUUCaacgaAGugccGCUGACGAucaCGCUGCa -3'
miRNA:   3'- -CGCAAGcg---UCua--CGAUUGCU---GCGACG- -5'
24123 5' -50.8 NC_005263.2 + 46171 0.66 0.882473
Target:  5'- gGCG-UCGCcGGUGCcGGCG-CGCUcguGCa -3'
miRNA:   3'- -CGCaAGCGuCUACGaUUGCuGCGA---CG- -5'
24123 5' -50.8 NC_005263.2 + 24700 0.66 0.882473
Target:  5'- gGCGgcgCGCcGAacgUGCcgGGCGGCGCagGCg -3'
miRNA:   3'- -CGCaa-GCGuCU---ACGa-UUGCUGCGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.