Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24123 | 5' | -50.8 | NC_005263.2 | + | 30238 | 0.68 | 0.789752 |
Target: 5'- uCGUUCGCGGcgaagcGUGCgcgguagucgucGGCGaaGCGCUGCg -3' miRNA: 3'- cGCAAGCGUC------UACGa-----------UUGC--UGCGACG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 45382 | 0.75 | 0.450544 |
Target: 5'- aCGUUCGUAcguGAUGCacGCG-CGCUGCg -3' miRNA: 3'- cGCAAGCGU---CUACGauUGCuGCGACG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 47676 | 0.66 | 0.904659 |
Target: 5'- aCG-UCGCGGcgauccucGUGCUGuGCGGCaaGCUGCu -3' miRNA: 3'- cGCaAGCGUC--------UACGAU-UGCUG--CGACG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 4856 | 0.66 | 0.882473 |
Target: 5'- cGCGcgCGCc-GUGCcGAUGcCGCUGCc -3' miRNA: 3'- -CGCaaGCGucUACGaUUGCuGCGACG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 9557 | 0.68 | 0.811717 |
Target: 5'- gGCGcUCGCGGcuUGCcaGGCGGCGC-GCu -3' miRNA: 3'- -CGCaAGCGUCu-ACGa-UUGCUGCGaCG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 18620 | 0.76 | 0.358768 |
Target: 5'- gGCGUUCGCggcAGGUggcaacccgggcgccGCUGGCGguACGCUGCc -3' miRNA: 3'- -CGCAAGCG---UCUA---------------CGAUUGC--UGCGACG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 9460 | 0.66 | 0.882473 |
Target: 5'- -gGUUgGCGucGAUGC--GCGACGCgGCu -3' miRNA: 3'- cgCAAgCGU--CUACGauUGCUGCGaCG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 18681 | 0.76 | 0.355239 |
Target: 5'- cCGUUCGCGcagcaaGCUAGCGGCGCgGCa -3' miRNA: 3'- cGCAAGCGUcua---CGAUUGCUGCGaCG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 12544 | 0.79 | 0.253991 |
Target: 5'- aCGUUCGCGGcgGCcGGCGGCGCcGUa -3' miRNA: 3'- cGCAAGCGUCuaCGaUUGCUGCGaCG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 10488 | 0.69 | 0.739035 |
Target: 5'- cGCcg-CGCAGGUGCUugccgucgaAGCGcACGUUGUg -3' miRNA: 3'- -CGcaaGCGUCUACGA---------UUGC-UGCGACG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 7056 | 0.68 | 0.830836 |
Target: 5'- cGCGccaaUgGCAGGUGCga---GCGCUGCg -3' miRNA: 3'- -CGCa---AgCGUCUACGauugcUGCGACG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 40039 | 0.67 | 0.872076 |
Target: 5'- cGCGUUCGUAGGa-CUGaucacggaacucgcGCGGCGCcacgGCg -3' miRNA: 3'- -CGCAAGCGUCUacGAU--------------UGCUGCGa---CG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 41587 | 0.66 | 0.882473 |
Target: 5'- aGCG-UCGC-GAUGCUcACGAC-CgGCu -3' miRNA: 3'- -CGCaAGCGuCUACGAuUGCUGcGaCG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 20863 | 0.66 | 0.890154 |
Target: 5'- cGCGagCGUc---GC-AACGGCGCUGCg -3' miRNA: 3'- -CGCaaGCGucuaCGaUUGCUGCGACG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 39320 | 0.66 | 0.911476 |
Target: 5'- cGCGaUCGCAGGUugGCUGcucaccCGGgGCUGg -3' miRNA: 3'- -CGCaAGCGUCUA--CGAUu-----GCUgCGACg -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 33128 | 0.69 | 0.764817 |
Target: 5'- aCGUcacgCGCAGAUcGCUGccgccagccaugagcGCGGCGCcuUGCa -3' miRNA: 3'- cGCAa---GCGUCUA-CGAU---------------UGCUGCG--ACG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 35757 | 0.73 | 0.51401 |
Target: 5'- cGCGggCGCGGuuacugcgGCUGGCGGCG-UGCc -3' miRNA: 3'- -CGCaaGCGUCua------CGAUUGCUGCgACG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 13971 | 0.71 | 0.659518 |
Target: 5'- cGCGUUCGCGGGgcguguaguUGCUcacguccacuucgAACuGACGCgcgagGCg -3' miRNA: 3'- -CGCAAGCGUCU---------ACGA-------------UUG-CUGCGa----CG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 35541 | 0.69 | 0.739035 |
Target: 5'- gGCGgcgCGCGGGcggGCgcuACGGCGCcGCc -3' miRNA: 3'- -CGCaa-GCGUCUa--CGau-UGCUGCGaCG- -5' |
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24123 | 5' | -50.8 | NC_005263.2 | + | 30376 | 0.67 | 0.849053 |
Target: 5'- aGCGcUUCGgGGAUGUgcGCGAuCGCUuCg -3' miRNA: 3'- -CGC-AAGCgUCUACGauUGCU-GCGAcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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