miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24123 5' -50.8 NC_005263.2 + 16403 0.69 0.754167
Target:  5'- cCGgcaUCGCGGGUGCgguacucggcguCGGCGCUGg -3'
miRNA:   3'- cGCa--AGCGUCUACGauu---------GCUGCGACg -5'
24123 5' -50.8 NC_005263.2 + 16593 0.68 0.811717
Target:  5'- cGCGUUCGCcGG-GCUcGCG-CGCgaGCa -3'
miRNA:   3'- -CGCAAGCGuCUaCGAuUGCuGCGa-CG- -5'
24123 5' -50.8 NC_005263.2 + 17032 0.7 0.717031
Target:  5'- aCGaugUCGCAGcgGCUGgugGCGGCGUgaacgGCu -3'
miRNA:   3'- cGCa--AGCGUCuaCGAU---UGCUGCGa----CG- -5'
24123 5' -50.8 NC_005263.2 + 17150 0.68 0.791786
Target:  5'- aGCGgucgacgUCGCGGuguucgGCUGGCaGACGaUUGCg -3'
miRNA:   3'- -CGCa------AGCGUCua----CGAUUG-CUGC-GACG- -5'
24123 5' -50.8 NC_005263.2 + 17418 0.73 0.51401
Target:  5'- gGCGgugUCGCAGGUGCaacAGCGGCcaGCUcGCc -3'
miRNA:   3'- -CGCa--AGCGUCUACGa--UUGCUG--CGA-CG- -5'
24123 5' -50.8 NC_005263.2 + 17625 0.67 0.866288
Target:  5'- cGCGggUCGCGcaucGAUGCguuccguCGGCGCUacgGCa -3'
miRNA:   3'- -CGCa-AGCGU----CUACGauu----GCUGCGA---CG- -5'
24123 5' -50.8 NC_005263.2 + 18273 0.69 0.781545
Target:  5'- gGCGUUCcggGC-GAUGCgcucgucguGCG-CGCUGCa -3'
miRNA:   3'- -CGCAAG---CGuCUACGau-------UGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 18620 0.76 0.358768
Target:  5'- gGCGUUCGCggcAGGUggcaacccgggcgccGCUGGCGguACGCUGCc -3'
miRNA:   3'- -CGCAAGCG---UCUA---------------CGAUUGC--UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 18681 0.76 0.355239
Target:  5'- cCGUUCGCGcagcaaGCUAGCGGCGCgGCa -3'
miRNA:   3'- cGCAAGCGUcua---CGAUUGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 19088 0.66 0.904659
Target:  5'- uGCGUcUUGCAGG-GCUGGcCGAUGUcgaauUGCu -3'
miRNA:   3'- -CGCA-AGCGUCUaCGAUU-GCUGCG-----ACG- -5'
24123 5' -50.8 NC_005263.2 + 19742 0.66 0.904659
Target:  5'- uGCGaucggCGCuGGcgcGCUGGCGGCGCUcGUg -3'
miRNA:   3'- -CGCaa---GCGuCUa--CGAUUGCUGCGA-CG- -5'
24123 5' -50.8 NC_005263.2 + 19958 0.67 0.866288
Target:  5'- uGCGcUCGC--GUGCU--CGGCGCUGg -3'
miRNA:   3'- -CGCaAGCGucUACGAuuGCUGCGACg -5'
24123 5' -50.8 NC_005263.2 + 20116 0.69 0.771137
Target:  5'- ----gCGCGGAUGCgcaGGCGuACGCUcGCg -3'
miRNA:   3'- cgcaaGCGUCUACGa--UUGC-UGCGA-CG- -5'
24123 5' -50.8 NC_005263.2 + 20691 0.69 0.739035
Target:  5'- cGCGacgCGaCAGcacucGCU-ACGACGCUGCa -3'
miRNA:   3'- -CGCaa-GC-GUCua---CGAuUGCUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 20863 0.66 0.890154
Target:  5'- cGCGagCGUc---GC-AACGGCGCUGCg -3'
miRNA:   3'- -CGCaaGCGucuaCGaUUGCUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 20921 0.67 0.873705
Target:  5'- gGCGUguacggaUCGCAGAcgaaUGCggugaUGACGgccgcGCGCUGUc -3'
miRNA:   3'- -CGCA-------AGCGUCU----ACG-----AUUGC-----UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 21120 0.72 0.614965
Target:  5'- gGCGca-GCGGGUGCUGcuCGGCGC-GCa -3'
miRNA:   3'- -CGCaagCGUCUACGAUu-GCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 21184 0.71 0.672038
Target:  5'- cCGgaCGCGGAcGCgcGCGGCGCggGCg -3'
miRNA:   3'- cGCaaGCGUCUaCGauUGCUGCGa-CG- -5'
24123 5' -50.8 NC_005263.2 + 21628 0.66 0.911476
Target:  5'- ----gCGCAG-UGC-GGCGACGCgcgGCg -3'
miRNA:   3'- cgcaaGCGUCuACGaUUGCUGCGa--CG- -5'
24123 5' -50.8 NC_005263.2 + 21864 0.73 0.535984
Target:  5'- cGCGUUCGCgacggccggcaAGAcGCUaucgaccgaguuGACGACGCcGCa -3'
miRNA:   3'- -CGCAAGCG-----------UCUaCGA------------UUGCUGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.