miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24123 5' -50.8 NC_005263.2 + 47676 0.66 0.904659
Target:  5'- aCG-UCGCGGcgauccucGUGCUGuGCGGCaaGCUGCu -3'
miRNA:   3'- cGCaAGCGUC--------UACGAU-UGCUG--CGACG- -5'
24123 5' -50.8 NC_005263.2 + 47559 0.67 0.874516
Target:  5'- cGCGUaaCGUAGcAUGCgccaccugcgGGCGGCGCUuuGCa -3'
miRNA:   3'- -CGCAa-GCGUC-UACGa---------UUGCUGCGA--CG- -5'
24123 5' -50.8 NC_005263.2 + 46566 0.66 0.890154
Target:  5'- cGUGUUCaacgaAGugccGCUGACGAucaCGCUGCa -3'
miRNA:   3'- -CGCAAGcg---UCua--CGAUUGCU---GCGACG- -5'
24123 5' -50.8 NC_005263.2 + 46494 0.67 0.866288
Target:  5'- cGCGUUCGaccCGGAUGCggucgaaAACGGCGaauacaGCa -3'
miRNA:   3'- -CGCAAGC---GUCUACGa------UUGCUGCga----CG- -5'
24123 5' -50.8 NC_005263.2 + 46171 0.66 0.882473
Target:  5'- gGCG-UCGCcGGUGCcGGCG-CGCUcguGCa -3'
miRNA:   3'- -CGCaAGCGuCUACGaUUGCuGCGA---CG- -5'
24123 5' -50.8 NC_005263.2 + 45382 0.75 0.450544
Target:  5'- aCGUUCGUAcguGAUGCacGCG-CGCUGCg -3'
miRNA:   3'- cGCAAGCGU---CUACGauUGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 45251 0.71 0.637823
Target:  5'- uCGUUCGCGaacGCU-GCGACGCUGa -3'
miRNA:   3'- cGCAAGCGUcuaCGAuUGCUGCGACg -5'
24123 5' -50.8 NC_005263.2 + 43921 0.66 0.904659
Target:  5'- ----gCGCAGAaGCacACGcCGCUGCa -3'
miRNA:   3'- cgcaaGCGUCUaCGauUGCuGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 42682 0.7 0.705887
Target:  5'- aCGgauaCGguGAUGCUGAUcgcagGGCGUUGCa -3'
miRNA:   3'- cGCaa--GCguCUACGAUUG-----CUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 42676 1.14 0.001124
Target:  5'- cGCGUUCGCAGAUGCUAACGACGCUGCc -3'
miRNA:   3'- -CGCAAGCGUCUACGAUUGCUGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 41587 0.66 0.882473
Target:  5'- aGCG-UCGC-GAUGCUcACGAC-CgGCu -3'
miRNA:   3'- -CGCaAGCGuCUACGAuUGCUGcGaCG- -5'
24123 5' -50.8 NC_005263.2 + 41156 0.69 0.749869
Target:  5'- gGCGUUCGC-GcgGCgugGGCGgccgucgucgauACGUUGCg -3'
miRNA:   3'- -CGCAAGCGuCuaCGa--UUGC------------UGCGACG- -5'
24123 5' -50.8 NC_005263.2 + 40286 0.72 0.608116
Target:  5'- cGCGguugCGCAGAUGCU--CGGCGUauaacgcguuacccgUGCu -3'
miRNA:   3'- -CGCaa--GCGUCUACGAuuGCUGCG---------------ACG- -5'
24123 5' -50.8 NC_005263.2 + 40039 0.67 0.872076
Target:  5'- cGCGUUCGUAGGa-CUGaucacggaacucgcGCGGCGCcacgGCg -3'
miRNA:   3'- -CGCAAGCGUCUacGAU--------------UGCUGCGa---CG- -5'
24123 5' -50.8 NC_005263.2 + 39320 0.66 0.911476
Target:  5'- cGCGaUCGCAGGUugGCUGcucaccCGGgGCUGg -3'
miRNA:   3'- -CGCaAGCGUCUA--CGAUu-----GCUgCGACg -5'
24123 5' -50.8 NC_005263.2 + 36943 0.68 0.811717
Target:  5'- cGCGUgUCGCAGccgGCcAGCuAgGCUGCg -3'
miRNA:   3'- -CGCA-AGCGUCua-CGaUUGcUgCGACG- -5'
24123 5' -50.8 NC_005263.2 + 35757 0.73 0.51401
Target:  5'- cGCGggCGCGGuuacugcgGCUGGCGGCG-UGCc -3'
miRNA:   3'- -CGCaaGCGUCua------CGAUUGCUGCgACG- -5'
24123 5' -50.8 NC_005263.2 + 35541 0.69 0.739035
Target:  5'- gGCGgcgCGCGGGcggGCgcuACGGCGCcGCc -3'
miRNA:   3'- -CGCaa-GCGUCUa--CGau-UGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 34048 0.67 0.857798
Target:  5'- cGCGgcgCGCucaAUGCgcuCGACGCgGCg -3'
miRNA:   3'- -CGCaa-GCGuc-UACGauuGCUGCGaCG- -5'
24123 5' -50.8 NC_005263.2 + 33573 0.67 0.857798
Target:  5'- cGCGUcuacaUCGaaaaAGcgGCgAACGGCGCcGCg -3'
miRNA:   3'- -CGCA-----AGCg---UCuaCGaUUGCUGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.