miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24124 5' -59.4 NC_005263.2 + 39706 0.67 0.392247
Target:  5'- cGCGAGCUggaaaugGCCgGCGCgGGCCgCGUCGa -3'
miRNA:   3'- aCGUUUGA-------CGG-CGUG-CCGGaGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 43500 0.67 0.378922
Target:  5'- gGCAccucgaAGCUGCCgGCGCGGCCguUCauggaaaagacgauuGCCGa -3'
miRNA:   3'- aCGU------UUGACGG-CGUGCCGG--AG---------------CGGCa -5'
24124 5' -59.4 NC_005263.2 + 39068 0.67 0.375421
Target:  5'- cGCGGAC-GUCGUAgcCGG-CUCGCCGUc -3'
miRNA:   3'- aCGUUUGaCGGCGU--GCCgGAGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 37955 0.67 0.375421
Target:  5'- cGCAAccgGCcgaUGCCGCGcCGGCUggCGCUGa -3'
miRNA:   3'- aCGUU---UG---ACGGCGU-GCCGGa-GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 41535 0.67 0.375421
Target:  5'- uUGCGc-CUGCgcaaaCGCGCGGCg-CGCCGUg -3'
miRNA:   3'- -ACGUuuGACG-----GCGUGCCGgaGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 24766 0.67 0.375421
Target:  5'- cUGCu-ACUGUCGCucacggGCGGCgucggcggCUCGCCGg -3'
miRNA:   3'- -ACGuuUGACGGCG------UGCCG--------GAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 36088 0.67 0.373678
Target:  5'- cGCAAGCUugagcgcGCCGUcgcguugAUGGCCgCGUCGUa -3'
miRNA:   3'- aCGUUUGA-------CGGCG-------UGCCGGaGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 14197 0.67 0.358244
Target:  5'- aGCAAGCguuCCGCgACGGCg-UGCCGUu -3'
miRNA:   3'- aCGUUUGac-GGCG-UGCCGgaGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 44555 0.67 0.358244
Target:  5'- gGCcGACgcGCUGCGCGGCaCUgCGCUGa -3'
miRNA:   3'- aCGuUUGa-CGGCGUGCCG-GA-GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 27470 0.67 0.366763
Target:  5'- cGCGGccACUGCgGcCACGGCCUUGacuuCGUu -3'
miRNA:   3'- aCGUU--UGACGgC-GUGCCGGAGCg---GCA- -5'
24124 5' -59.4 NC_005263.2 + 45517 0.67 0.366763
Target:  5'- gGCGaccuucacGACUGCCuGgACGGCCgugaUUGCCGa -3'
miRNA:   3'- aCGU--------UUGACGG-CgUGCCGG----AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 23560 0.68 0.349864
Target:  5'- cGCAGccGCcGCCGCcCGcGCCgcCGCCGUu -3'
miRNA:   3'- aCGUU--UGaCGGCGuGC-CGGa-GCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 11297 0.68 0.333526
Target:  5'- cGaCGAGCaGCgGCAauuuaUGGCCUCGCCa- -3'
miRNA:   3'- aC-GUUUGaCGgCGU-----GCCGGAGCGGca -5'
24124 5' -59.4 NC_005263.2 + 41847 0.68 0.349864
Target:  5'- aGuCAAGCUGCCcgacgGCACGaccgcGCCUgGCCGc -3'
miRNA:   3'- aC-GUUUGACGG-----CGUGC-----CGGAgCGGCa -5'
24124 5' -59.4 NC_005263.2 + 20863 0.68 0.341624
Target:  5'- cGCGAGC-GUCGCaACGGCgCUgCGCCa- -3'
miRNA:   3'- aCGUUUGaCGGCG-UGCCG-GA-GCGGca -5'
24124 5' -59.4 NC_005263.2 + 41251 0.68 0.341624
Target:  5'- cGCGAGggcuacCUGUCGC-CGGUCgugUCGCCGUc -3'
miRNA:   3'- aCGUUU------GACGGCGuGCCGG---AGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 29183 0.68 0.341624
Target:  5'- aGCGcuCgUGCCGCGCGGUCaCGCuCGa -3'
miRNA:   3'- aCGUuuG-ACGGCGUGCCGGaGCG-GCa -5'
24124 5' -59.4 NC_005263.2 + 21396 0.68 0.333526
Target:  5'- cGC--GCUGCCGCAggcCGGCCU-GCuCGg -3'
miRNA:   3'- aCGuuUGACGGCGU---GCCGGAgCG-GCa -5'
24124 5' -59.4 NC_005263.2 + 20934 0.68 0.333526
Target:  5'- cGCAGACgaaUGCgGUgaugACGGCCgcgCGCUGUc -3'
miRNA:   3'- aCGUUUG---ACGgCG----UGCCGGa--GCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 8380 0.68 0.317755
Target:  5'- cGCucGCcagGUCGaCGCGGCCcgCGCCGg -3'
miRNA:   3'- aCGuuUGa--CGGC-GUGCCGGa-GCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.