Results 21 - 40 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 20320 | 0.66 | 0.448477 |
Target: 5'- gGCGAugUaCCGCGCgaagcauGGCCUgcCGCCGc -3' miRNA: 3'- aCGUUugAcGGCGUG-------CCGGA--GCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 41803 | 0.66 | 0.449452 |
Target: 5'- uUGCAAACcggGCgCGC-CGGUgUUGCUGUu -3' miRNA: 3'- -ACGUUUGa--CG-GCGuGCCGgAGCGGCA- -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 6764 | 0.66 | 0.449452 |
Target: 5'- cGCGcGCcggGCgaGCuCGGCCUCGUCGa -3' miRNA: 3'- aCGUuUGa--CGg-CGuGCCGGAGCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 21580 | 0.66 | 0.449452 |
Target: 5'- cGCGuGCUcGCCGC-CGGCgUcgaCGCCGc -3' miRNA: 3'- aCGUuUGA-CGGCGuGCCGgA---GCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 3305 | 0.66 | 0.453363 |
Target: 5'- uUGCcuGGGCgcgGCCGCGCGGUgUucaacgucugcgcgcCGCCGg -3' miRNA: 3'- -ACG--UUUGa--CGGCGUGCCGgA---------------GCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 3180 | 0.66 | 0.453363 |
Target: 5'- cGCGgaauAACUGCCGCugcgcgucggcgagcGCGGCCaggaUCggGCCGa -3' miRNA: 3'- aCGU----UUGACGGCG---------------UGCCGG----AG--CGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 39973 | 0.66 | 0.430182 |
Target: 5'- cGCAAgaaGCUGuCCuGCAUaugGGCCUgcCGCCGa -3' miRNA: 3'- aCGUU---UGAC-GG-CGUG---CCGGA--GCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 31235 | 0.66 | 0.430182 |
Target: 5'- uUGCAGgggcGCUucgguuCCGCGCGGCgCggCGCCGg -3' miRNA: 3'- -ACGUU----UGAc-----GGCGUGCCG-Ga-GCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 19704 | 0.66 | 0.430182 |
Target: 5'- aGCGAuCUGCaCGCcggcCGGCUUCGUgGUc -3' miRNA: 3'- aCGUUuGACG-GCGu---GCCGGAGCGgCA- -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 11944 | 0.66 | 0.430182 |
Target: 5'- cGCAccg-GUCGCGCaGGCCgUCGCCa- -3' miRNA: 3'- aCGUuugaCGGCGUG-CCGG-AGCGGca -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 3766 | 0.66 | 0.420731 |
Target: 5'- cGCGGGCaGCgGCACGGUgUucucccacaCGCCGa -3' miRNA: 3'- aCGUUUGaCGgCGUGCCGgA---------GCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 24967 | 0.66 | 0.439757 |
Target: 5'- cGCAGAUcggcaacacgaUGCUgGC-CGGCCUgGCCGc -3' miRNA: 3'- aCGUUUG-----------ACGG-CGuGCCGGAgCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 21966 | 0.67 | 0.393146 |
Target: 5'- cGCAGGCaUGCUGCGCGcGCagaUCuGCCa- -3' miRNA: 3'- aCGUUUG-ACGGCGUGC-CGg--AG-CGGca -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 36088 | 0.67 | 0.373678 |
Target: 5'- cGCAAGCUugagcgcGCCGUcgcguugAUGGCCgCGUCGUa -3' miRNA: 3'- aCGUUUGA-------CGGCG-------UGCCGGaGCGGCA- -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 24766 | 0.67 | 0.375421 |
Target: 5'- cUGCu-ACUGUCGCucacggGCGGCgucggcggCUCGCCGg -3' miRNA: 3'- -ACGuuUGACGGCG------UGCCG--------GAGCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 41535 | 0.67 | 0.375421 |
Target: 5'- uUGCGc-CUGCgcaaaCGCGCGGCg-CGCCGUg -3' miRNA: 3'- -ACGUuuGACG-----GCGUGCCGgaGCGGCA- -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 37955 | 0.67 | 0.375421 |
Target: 5'- cGCAAccgGCcgaUGCCGCGcCGGCUggCGCUGa -3' miRNA: 3'- aCGUU---UG---ACGGCGU-GCCGGa-GCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 39068 | 0.67 | 0.375421 |
Target: 5'- cGCGGAC-GUCGUAgcCGG-CUCGCCGUc -3' miRNA: 3'- aCGUUUGaCGGCGU--GCCgGAGCGGCA- -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 43500 | 0.67 | 0.378922 |
Target: 5'- gGCAccucgaAGCUGCCgGCGCGGCCguUCauggaaaagacgauuGCCGa -3' miRNA: 3'- aCGU------UUGACGG-CGUGCCGG--AG---------------CGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 7794 | 0.67 | 0.384216 |
Target: 5'- cGCGca-UGCgGUACGGCUUUGCCu- -3' miRNA: 3'- aCGUuugACGgCGUGCCGGAGCGGca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home