Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 44874 | 0.65 | 0.458277 |
Target: 5'- gUGCAGauGCUGCCcggcgucaucgggGCgggcgGCGGCCggGCCGg -3' miRNA: 3'- -ACGUU--UGACGG-------------CG-----UGCCGGagCGGCa -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 38508 | 0.65 | 0.458277 |
Target: 5'- cGCGAugaucgcGCUGCCGCaaugggACGGCaCgcagCGCCu- -3' miRNA: 3'- aCGUU-------UGACGGCG------UGCCG-Ga---GCGGca -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 19704 | 0.66 | 0.430182 |
Target: 5'- aGCGAuCUGCaCGCcggcCGGCUUCGUgGUc -3' miRNA: 3'- aCGUUuGACG-GCGu---GCCGGAGCGgCA- -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 11944 | 0.66 | 0.430182 |
Target: 5'- cGCAccg-GUCGCGCaGGCCgUCGCCa- -3' miRNA: 3'- aCGUuugaCGGCGUG-CCGG-AGCGGca -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 3766 | 0.66 | 0.420731 |
Target: 5'- cGCGGGCaGCgGCACGGUgUucucccacaCGCCGa -3' miRNA: 3'- aCGUUUGaCGgCGUGCCGgA---------GCGGCa -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 26136 | 0.66 | 0.420731 |
Target: 5'- gGCAGAuCUGCgCGCGCagcauGCCUgCGUCGUu -3' miRNA: 3'- aCGUUU-GACG-GCGUGc----CGGA-GCGGCA- -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 37009 | 0.66 | 0.419792 |
Target: 5'- aGCGgaacAGCUGCuuaCGCGCGGCgUCaucccacgcuuuuGCCGUg -3' miRNA: 3'- aCGU----UUGACG---GCGUGCCGgAG-------------CGGCA- -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 17816 | 0.66 | 0.41512 |
Target: 5'- gGCGGccgaggaUGCCGCgcGCGGCCcgauugcgcagcgcuUCGCCGa -3' miRNA: 3'- aCGUUug-----ACGGCG--UGCCGG---------------AGCGGCa -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 6243 | 0.66 | 0.411406 |
Target: 5'- cGCucGCgGCCagGCGCGGUCgUGCCGUc -3' miRNA: 3'- aCGuuUGaCGG--CGUGCCGGaGCGGCA- -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 35912 | 0.66 | 0.411406 |
Target: 5'- gGaCGAGCUGCCGCAUcGCUUCaucgcgacacgGCCGc -3' miRNA: 3'- aC-GUUUGACGGCGUGcCGGAG-----------CGGCa -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 31235 | 0.66 | 0.430182 |
Target: 5'- uUGCAGgggcGCUucgguuCCGCGCGGCgCggCGCCGg -3' miRNA: 3'- -ACGUU----UGAc-----GGCGUGCCG-Ga-GCGGCa -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 39973 | 0.66 | 0.430182 |
Target: 5'- cGCAAgaaGCUGuCCuGCAUaugGGCCUgcCGCCGa -3' miRNA: 3'- aCGUU---UGAC-GG-CGUG---CCGGA--GCGGCa -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 3305 | 0.66 | 0.453363 |
Target: 5'- uUGCcuGGGCgcgGCCGCGCGGUgUucaacgucugcgcgcCGCCGg -3' miRNA: 3'- -ACG--UUUGa--CGGCGUGCCGgA---------------GCGGCa -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 21580 | 0.66 | 0.449452 |
Target: 5'- cGCGuGCUcGCCGC-CGGCgUcgaCGCCGc -3' miRNA: 3'- aCGUuUGA-CGGCGuGCCGgA---GCGGCa -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 6764 | 0.66 | 0.449452 |
Target: 5'- cGCGcGCcggGCgaGCuCGGCCUCGUCGa -3' miRNA: 3'- aCGUuUGa--CGg-CGuGCCGGAGCGGCa -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 41803 | 0.66 | 0.449452 |
Target: 5'- uUGCAAACcggGCgCGC-CGGUgUUGCUGUu -3' miRNA: 3'- -ACGUUUGa--CG-GCGuGCCGgAGCGGCA- -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 20320 | 0.66 | 0.448477 |
Target: 5'- gGCGAugUaCCGCGCgaagcauGGCCUgcCGCCGc -3' miRNA: 3'- aCGUUugAcGGCGUG-------CCGGA--GCGGCa -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 24967 | 0.66 | 0.439757 |
Target: 5'- cGCAGAUcggcaacacgaUGCUgGC-CGGCCUgGCCGc -3' miRNA: 3'- aCGUUUG-----------ACGG-CGuGCCGGAgCGGCa -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 35620 | 0.66 | 0.439757 |
Target: 5'- cGCAGGaUGCCGCAauGCg-CGCCGc -3' miRNA: 3'- aCGUUUgACGGCGUgcCGgaGCGGCa -5' |
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24124 | 5' | -59.4 | NC_005263.2 | + | 1432 | 0.66 | 0.430182 |
Target: 5'- cGCcuuGGCUGCgCGCGaGGCUUCGCgGc -3' miRNA: 3'- aCGu--UUGACG-GCGUgCCGGAGCGgCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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