miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24124 5' -59.4 NC_005263.2 + 42496 1.07 0.00039
Target:  5'- cUGCAAACUGCCGCACGGCCUCGCCGUg -3'
miRNA:   3'- -ACGUUUGACGGCGUGCCGGAGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 19102 0.81 0.041618
Target:  5'- cGCAAcgcACUGCCGguCGGCCgCGCCGa -3'
miRNA:   3'- aCGUU---UGACGGCguGCCGGaGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 32986 0.75 0.11289
Target:  5'- uUGCGcGCUGCguauucgCGCGCGGCCUCGaCGUu -3'
miRNA:   3'- -ACGUuUGACG-------GCGUGCCGGAGCgGCA- -5'
24124 5' -59.4 NC_005263.2 + 17386 0.74 0.123073
Target:  5'- aGCuguCUGCCgGCGCGGCCgcgCGCCu- -3'
miRNA:   3'- aCGuuuGACGG-CGUGCCGGa--GCGGca -5'
24124 5' -59.4 NC_005263.2 + 31619 0.74 0.123073
Target:  5'- cGC-GACgGCCGCGCGGCgcagCGCCGUc -3'
miRNA:   3'- aCGuUUGaCGGCGUGCCGga--GCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 31529 0.74 0.123073
Target:  5'- gGCGAACgcgucGCCGC-CGGCCUUGgCGUc -3'
miRNA:   3'- aCGUUUGa----CGGCGuGCCGGAGCgGCA- -5'
24124 5' -59.4 NC_005263.2 + 31382 0.74 0.133735
Target:  5'- cUGCGGGCUGCuCGCGCGGUaggugCGCUGc -3'
miRNA:   3'- -ACGUUUGACG-GCGUGCCGga---GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 44790 0.73 0.153407
Target:  5'- cGCAGACguugaacaCCGCGCGGCCgCGCCc- -3'
miRNA:   3'- aCGUUUGac------GGCGUGCCGGaGCGGca -5'
24124 5' -59.4 NC_005263.2 + 13150 0.73 0.157644
Target:  5'- gGCAucgccuauauGGCUGCCgGCACGGCaCUaaCGCCGa -3'
miRNA:   3'- aCGU----------UUGACGG-CGUGCCG-GA--GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 46664 0.73 0.157644
Target:  5'- cGCGAGC-GCCGCGaaGCCUCGCgCGc -3'
miRNA:   3'- aCGUUUGaCGGCGUgcCGGAGCG-GCa -5'
24124 5' -59.4 NC_005263.2 + 27782 0.72 0.166437
Target:  5'- gGCAGGCcaUGCuuCGCGCGGUacaUCGCCGUc -3'
miRNA:   3'- aCGUUUG--ACG--GCGUGCCGg--AGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 25610 0.72 0.170997
Target:  5'- cGcCGAACcGCCGC-CGGCCgcCGCCGg -3'
miRNA:   3'- aC-GUUUGaCGGCGuGCCGGa-GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 44164 0.72 0.175668
Target:  5'- cUGCAGAacggcgccaacCUGCCGguCGGCCU-GCCGc -3'
miRNA:   3'- -ACGUUU-----------GACGGCguGCCGGAgCGGCa -5'
24124 5' -59.4 NC_005263.2 + 25990 0.72 0.175668
Target:  5'- cGCuuucAGCUGCCacucGCGCGGCacuUCGCCGa -3'
miRNA:   3'- aCGu---UUGACGG----CGUGCCGg--AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 30938 0.72 0.175668
Target:  5'- cGCGAGCUG-CGCAuuCGGCUUCucgGCCGUg -3'
miRNA:   3'- aCGUUUGACgGCGU--GCCGGAG---CGGCA- -5'
24124 5' -59.4 NC_005263.2 + 26203 0.72 0.180452
Target:  5'- uUGCGAGCUGCCcuuGCGGCgUCGUCa- -3'
miRNA:   3'- -ACGUUUGACGGcg-UGCCGgAGCGGca -5'
24124 5' -59.4 NC_005263.2 + 30349 0.72 0.190367
Target:  5'- gUGcCGAGCgcgGCCGCGCuGCCgccggCGCCGa -3'
miRNA:   3'- -AC-GUUUGa--CGGCGUGcCGGa----GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 45443 0.72 0.190367
Target:  5'- cUGCAGGCUGCCGguguCGCcGCCgauaCGCCGg -3'
miRNA:   3'- -ACGUUUGACGGC----GUGcCGGa---GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 18691 0.71 0.195502
Target:  5'- aGCAAGCUaGCgGCGCGGCaggCGCgGg -3'
miRNA:   3'- aCGUUUGA-CGgCGUGCCGga-GCGgCa -5'
24124 5' -59.4 NC_005263.2 + 21917 0.71 0.195502
Target:  5'- cGCGcGGCcGCCGCGCGGCCgcaGaCCGUc -3'
miRNA:   3'- aCGU-UUGaCGGCGUGCCGGag-C-GGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.