miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24124 5' -59.4 NC_005263.2 + 10481 0.71 0.206136
Target:  5'- aGCAggUcGCCGCGCaGGUgCUUGCCGUc -3'
miRNA:   3'- aCGUuuGaCGGCGUG-CCG-GAGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 20822 0.71 0.211638
Target:  5'- cUGCAGGC-GCgGCuCGGCCUCGCg-- -3'
miRNA:   3'- -ACGUUUGaCGgCGuGCCGGAGCGgca -5'
24124 5' -59.4 NC_005263.2 + 45767 0.71 0.211638
Target:  5'- cUGCGcAACgGCCGCACGGUgCUCGCg-- -3'
miRNA:   3'- -ACGU-UUGaCGGCGUGCCG-GAGCGgca -5'
24124 5' -59.4 NC_005263.2 + 22104 0.71 0.212196
Target:  5'- gGCGugacGGCUGCCGC-CGGCacgcugcaagcgcgaUCGCCGg -3'
miRNA:   3'- aCGU----UUGACGGCGuGCCGg--------------AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 20133 0.71 0.217267
Target:  5'- gGCAAGCgcgaCgGUACGGCCgucgCGCCGg -3'
miRNA:   3'- aCGUUUGac--GgCGUGCCGGa---GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 16490 0.71 0.217267
Target:  5'- cGCu-GC-GCCGCGCGGCCgucgCGaCCGg -3'
miRNA:   3'- aCGuuUGaCGGCGUGCCGGa---GC-GGCa -5'
24124 5' -59.4 NC_005263.2 + 12501 0.71 0.217267
Target:  5'- gGCAucCUGCgCGC-CGGCUUCGCgCGg -3'
miRNA:   3'- aCGUuuGACG-GCGuGCCGGAGCG-GCa -5'
24124 5' -59.4 NC_005263.2 + 28212 0.71 0.222441
Target:  5'- gGCGAGCUGUugguggccUGCAuCGGCCgcgcucgccgcgcUCGCCGUg -3'
miRNA:   3'- aCGUUUGACG--------GCGU-GCCGG-------------AGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 9004 0.71 0.223022
Target:  5'- gGCGcACgaGUCGCGCGuaCUCGCCGUc -3'
miRNA:   3'- aCGUuUGa-CGGCGUGCcgGAGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 16769 0.7 0.228908
Target:  5'- cGCGccuGACgGCCGC-CGGCguaUCGCCGg -3'
miRNA:   3'- aCGU---UUGaCGGCGuGCCGg--AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 37409 0.7 0.228908
Target:  5'- gUGCAucGC-GUCGCGCGGCCguccUCGUCGUc -3'
miRNA:   3'- -ACGUu-UGaCGGCGUGCCGG----AGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 17414 0.7 0.228908
Target:  5'- gGCGGGCggUGUCGCaggugcaacaGCGGCCagcUCGCCGUc -3'
miRNA:   3'- aCGUUUG--ACGGCG----------UGCCGG---AGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 19043 0.7 0.228908
Target:  5'- aUGCGcgccgccccgagGACgcGCCGCGCGGCCUgCGCgCGc -3'
miRNA:   3'- -ACGU------------UUGa-CGGCGUGCCGGA-GCG-GCa -5'
24124 5' -59.4 NC_005263.2 + 28333 0.7 0.241071
Target:  5'- uUGCGAACgauUGCCcaCACGGCCacgagCGCCGc -3'
miRNA:   3'- -ACGUUUG---ACGGc-GUGCCGGa----GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 30701 0.7 0.241071
Target:  5'- cUGCGAcACcGCCcgccaggcGCGCGGCCgCGCCGg -3'
miRNA:   3'- -ACGUU-UGaCGG--------CGUGCCGGaGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 27674 0.7 0.247353
Target:  5'- gGCAAGCacgGCCGCcuucuuguGCGcGCCggCGCCGg -3'
miRNA:   3'- aCGUUUGa--CGGCG--------UGC-CGGa-GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 419 0.7 0.247353
Target:  5'- aGCAGcUUGCCGCACaGCacgaggaUCGCCGc -3'
miRNA:   3'- aCGUUuGACGGCGUGcCGg------AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 29502 0.7 0.253769
Target:  5'- cGCGAAC-GCCGCuGCGGCgUcCGUCGg -3'
miRNA:   3'- aCGUUUGaCGGCG-UGCCGgA-GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 46059 0.7 0.253769
Target:  5'- cGCGAACUaCCGCGCgGGCgUCGaCGUg -3'
miRNA:   3'- aCGUUUGAcGGCGUG-CCGgAGCgGCA- -5'
24124 5' -59.4 NC_005263.2 + 40410 0.7 0.260322
Target:  5'- gUGCAcAC-GCCGCGCGGCCgacUCGaacCCGg -3'
miRNA:   3'- -ACGUuUGaCGGCGUGCCGG---AGC---GGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.