miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24124 5' -59.4 NC_005263.2 + 9515 0.69 0.295162
Target:  5'- cGCGGGCUGaauCGUGCGGCCgugCGCgGc -3'
miRNA:   3'- aCGUUUGACg--GCGUGCCGGa--GCGgCa -5'
24124 5' -59.4 NC_005263.2 + 23260 0.69 0.273839
Target:  5'- cGCcGGCUGgCGCAcCGGCaC-CGCCGUu -3'
miRNA:   3'- aCGuUUGACgGCGU-GCCG-GaGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 18691 0.71 0.195502
Target:  5'- aGCAAGCUaGCgGCGCGGCaggCGCgGg -3'
miRNA:   3'- aCGUUUGA-CGgCGUGCCGga-GCGgCa -5'
24124 5' -59.4 NC_005263.2 + 31619 0.74 0.123073
Target:  5'- cGC-GACgGCCGCGCGGCgcagCGCCGUc -3'
miRNA:   3'- aCGuUUGaCGGCGUGCCGga--GCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 37769 0.67 0.356556
Target:  5'- gGCAAGCUGCCGCGCcuGCgCgagaucgacgagCGUCGUu -3'
miRNA:   3'- aCGUUUGACGGCGUGc-CG-Ga-----------GCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 11297 0.68 0.333526
Target:  5'- cGaCGAGCaGCgGCAauuuaUGGCCUCGCCa- -3'
miRNA:   3'- aC-GUUUGaCGgCGU-----GCCGGAGCGGca -5'
24124 5' -59.4 NC_005263.2 + 40410 0.7 0.260322
Target:  5'- gUGCAcAC-GCCGCGCGGCCgacUCGaacCCGg -3'
miRNA:   3'- -ACGUuUGaCGGCGUGCCGG---AGC---GGCa -5'
24124 5' -59.4 NC_005263.2 + 31529 0.74 0.123073
Target:  5'- gGCGAACgcgucGCCGC-CGGCCUUGgCGUc -3'
miRNA:   3'- aCGUUUGa----CGGCGuGCCGGAGCgGCA- -5'
24124 5' -59.4 NC_005263.2 + 21396 0.68 0.333526
Target:  5'- cGC--GCUGCCGCAggcCGGCCU-GCuCGg -3'
miRNA:   3'- aCGuuUGACGGCGU---GCCGGAgCG-GCa -5'
24124 5' -59.4 NC_005263.2 + 32986 0.75 0.11289
Target:  5'- uUGCGcGCUGCguauucgCGCGCGGCCUCGaCGUu -3'
miRNA:   3'- -ACGUuUGACG-------GCGUGCCGGAGCgGCA- -5'
24124 5' -59.4 NC_005263.2 + 31752 0.69 0.267011
Target:  5'- aGCGAcGCgGCCGCGCGcuucGUCUCGUCGa -3'
miRNA:   3'- aCGUU-UGaCGGCGUGC----CGGAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 6864 0.69 0.298101
Target:  5'- aGCGGAUUGCgGCgACGGCauuguccaucgagggCUUGCCGg -3'
miRNA:   3'- aCGUUUGACGgCG-UGCCG---------------GAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 12501 0.71 0.217267
Target:  5'- gGCAucCUGCgCGC-CGGCUUCGCgCGg -3'
miRNA:   3'- aCGUuuGACG-GCGuGCCGGAGCG-GCa -5'
24124 5' -59.4 NC_005263.2 + 21917 0.71 0.195502
Target:  5'- cGCGcGGCcGCCGCGCGGCCgcaGaCCGUc -3'
miRNA:   3'- aCGU-UUGaCGGCGUGCCGGag-C-GGCA- -5'
24124 5' -59.4 NC_005263.2 + 27782 0.72 0.166437
Target:  5'- gGCAGGCcaUGCuuCGCGCGGUacaUCGCCGUc -3'
miRNA:   3'- aCGUUUG--ACG--GCGUGCCGg--AGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 31382 0.74 0.133735
Target:  5'- cUGCGGGCUGCuCGCGCGGUaggugCGCUGc -3'
miRNA:   3'- -ACGUUUGACG-GCGUGCCGga---GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 46924 0.67 0.401298
Target:  5'- cGC--GCUGCCGCGCagcacgaGGCacaagUCGCCGc -3'
miRNA:   3'- aCGuuUGACGGCGUG-------CCGg----AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 10174 0.67 0.366763
Target:  5'- cGCAccGGCUGCCgGCgGCGcGCCUgCGCCc- -3'
miRNA:   3'- aCGU--UUGACGG-CG-UGC-CGGA-GCGGca -5'
24124 5' -59.4 NC_005263.2 + 20863 0.68 0.341624
Target:  5'- cGCGAGC-GUCGCaACGGCgCUgCGCCa- -3'
miRNA:   3'- aCGUUUGaCGGCG-UGCCG-GA-GCGGca -5'
24124 5' -59.4 NC_005263.2 + 20934 0.68 0.333526
Target:  5'- cGCAGACgaaUGCgGUgaugACGGCCgcgCGCUGUc -3'
miRNA:   3'- aCGUUUG---ACGgCG----UGCCGGa--GCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.