miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24124 5' -59.4 NC_005263.2 + 11297 0.68 0.333526
Target:  5'- cGaCGAGCaGCgGCAauuuaUGGCCUCGCCa- -3'
miRNA:   3'- aC-GUUUGaCGgCGU-----GCCGGAGCGGca -5'
24124 5' -59.4 NC_005263.2 + 11459 0.66 0.439757
Target:  5'- aUGCAAgccgagcucgcGCUGCCGCGCacuguuaaacuGcGCCgUCGCCu- -3'
miRNA:   3'- -ACGUU-----------UGACGGCGUG-----------C-CGG-AGCGGca -5'
24124 5' -59.4 NC_005263.2 + 11944 0.66 0.430182
Target:  5'- cGCAccg-GUCGCGCaGGCCgUCGCCa- -3'
miRNA:   3'- aCGUuugaCGGCGUG-CCGG-AGCGGca -5'
24124 5' -59.4 NC_005263.2 + 12501 0.71 0.217267
Target:  5'- gGCAucCUGCgCGC-CGGCUUCGCgCGg -3'
miRNA:   3'- aCGUuuGACG-GCGuGCCGGAGCG-GCa -5'
24124 5' -59.4 NC_005263.2 + 13150 0.73 0.157644
Target:  5'- gGCAucgccuauauGGCUGCCgGCACGGCaCUaaCGCCGa -3'
miRNA:   3'- aCGU----------UUGACGG-CGUGCCG-GA--GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 14095 0.69 0.280807
Target:  5'- gGCugguACcgGCUGCGCGGCggUCGCCGUc -3'
miRNA:   3'- aCGuu--UGa-CGGCGUGCCGg-AGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 14109 0.69 0.267011
Target:  5'- cGCGAcGCaGCCaacacgGC-CGGCCUCGCCGc -3'
miRNA:   3'- aCGUU-UGaCGG------CGuGCCGGAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 14197 0.67 0.358244
Target:  5'- aGCAAGCguuCCGCgACGGCg-UGCCGUu -3'
miRNA:   3'- aCGUUUGac-GGCG-UGCCGgaGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 15824 0.66 0.446531
Target:  5'- cGaCAAACgaugcGCCGUucgccacuucgaucACGGCCUUGUCGa -3'
miRNA:   3'- aC-GUUUGa----CGGCG--------------UGCCGGAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 16426 0.69 0.295162
Target:  5'- gGCGucggcGCUGgCGCgGCgGGCCUCGCUGg -3'
miRNA:   3'- aCGUu----UGACgGCG-UG-CCGGAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 16490 0.71 0.217267
Target:  5'- cGCu-GC-GCCGCGCGGCCgucgCGaCCGg -3'
miRNA:   3'- aCGuuUGaCGGCGUGCCGGa---GC-GGCa -5'
24124 5' -59.4 NC_005263.2 + 16769 0.7 0.228908
Target:  5'- cGCGccuGACgGCCGC-CGGCguaUCGCCGg -3'
miRNA:   3'- aCGU---UUGaCGGCGuGCCGg--AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 17386 0.74 0.123073
Target:  5'- aGCuguCUGCCgGCGCGGCCgcgCGCCu- -3'
miRNA:   3'- aCGuuuGACGG-CGUGCCGGa--GCGGca -5'
24124 5' -59.4 NC_005263.2 + 17414 0.7 0.228908
Target:  5'- gGCGGGCggUGUCGCaggugcaacaGCGGCCagcUCGCCGUc -3'
miRNA:   3'- aCGUUUG--ACGGCG----------UGCCGG---AGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 17816 0.66 0.41512
Target:  5'- gGCGGccgaggaUGCCGCgcGCGGCCcgauugcgcagcgcuUCGCCGa -3'
miRNA:   3'- aCGUUug-----ACGGCG--UGCCGG---------------AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 18691 0.71 0.195502
Target:  5'- aGCAAGCUaGCgGCGCGGCaggCGCgGg -3'
miRNA:   3'- aCGUUUGA-CGgCGUGCCGga-GCGgCa -5'
24124 5' -59.4 NC_005263.2 + 19043 0.7 0.228908
Target:  5'- aUGCGcgccgccccgagGACgcGCCGCGCGGCCUgCGCgCGc -3'
miRNA:   3'- -ACGU------------UUGa-CGGCGUGCCGGA-GCG-GCa -5'
24124 5' -59.4 NC_005263.2 + 19102 0.81 0.041618
Target:  5'- cGCAAcgcACUGCCGguCGGCCgCGCCGa -3'
miRNA:   3'- aCGUU---UGACGGCguGCCGGaGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 19704 0.66 0.430182
Target:  5'- aGCGAuCUGCaCGCcggcCGGCUUCGUgGUc -3'
miRNA:   3'- aCGUUuGACG-GCGu---GCCGGAGCGgCA- -5'
24124 5' -59.4 NC_005263.2 + 19741 0.66 0.430182
Target:  5'- aUGCGAucggcGCUGgCGCgcugGCGGCgCUCgugGCCGUg -3'
miRNA:   3'- -ACGUU-----UGACgGCG----UGCCG-GAG---CGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.