miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24124 5' -59.4 NC_005263.2 + 419 0.7 0.247353
Target:  5'- aGCAGcUUGCCGCACaGCacgaggaUCGCCGc -3'
miRNA:   3'- aCGUUuGACGGCGUGcCGg------AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 1432 0.66 0.430182
Target:  5'- cGCcuuGGCUGCgCGCGaGGCUUCGCgGc -3'
miRNA:   3'- aCGu--UUGACG-GCGUgCCGGAGCGgCa -5'
24124 5' -59.4 NC_005263.2 + 2684 0.66 0.411406
Target:  5'- gUGguAGCUGaUCGCGCGGCCgcUCGgCa- -3'
miRNA:   3'- -ACguUUGAC-GGCGUGCCGG--AGCgGca -5'
24124 5' -59.4 NC_005263.2 + 2905 0.69 0.280807
Target:  5'- gGCcgAGACgUGCUGCGCGGCCgUCGuaaCCGUc -3'
miRNA:   3'- aCG--UUUG-ACGGCGUGCCGG-AGC---GGCA- -5'
24124 5' -59.4 NC_005263.2 + 3180 0.66 0.453363
Target:  5'- cGCGgaauAACUGCCGCugcgcgucggcgagcGCGGCCaggaUCggGCCGa -3'
miRNA:   3'- aCGU----UUGACGGCG---------------UGCCGG----AG--CGGCa -5'
24124 5' -59.4 NC_005263.2 + 3305 0.66 0.453363
Target:  5'- uUGCcuGGGCgcgGCCGCGCGGUgUucaacgucugcgcgcCGCCGg -3'
miRNA:   3'- -ACG--UUUGa--CGGCGUGCCGgA---------------GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 3766 0.66 0.420731
Target:  5'- cGCGGGCaGCgGCACGGUgUucucccacaCGCCGa -3'
miRNA:   3'- aCGUUUGaCGgCGUGCCGgA---------GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 6243 0.66 0.411406
Target:  5'- cGCucGCgGCCagGCGCGGUCgUGCCGUc -3'
miRNA:   3'- aCGuuUGaCGG--CGUGCCGGaGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 6764 0.66 0.449452
Target:  5'- cGCGcGCcggGCgaGCuCGGCCUCGUCGa -3'
miRNA:   3'- aCGUuUGa--CGg-CGuGCCGGAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 6864 0.69 0.298101
Target:  5'- aGCGGAUUGCgGCgACGGCauuguccaucgagggCUUGCCGg -3'
miRNA:   3'- aCGUUUGACGgCG-UGCCG---------------GAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 7156 0.67 0.375421
Target:  5'- aGCGAccCUaUUGCGCGGCCaUCGCCGc -3'
miRNA:   3'- aCGUUu-GAcGGCGUGCCGG-AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 7794 0.67 0.384216
Target:  5'- cGCGca-UGCgGUACGGCUUUGCCu- -3'
miRNA:   3'- aCGUuugACGgCGUGCCGGAGCGGca -5'
24124 5' -59.4 NC_005263.2 + 8380 0.68 0.317755
Target:  5'- cGCucGCcagGUCGaCGCGGCCcgCGCCGg -3'
miRNA:   3'- aCGuuUGa--CGGC-GUGCCGGa-GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 9004 0.71 0.223022
Target:  5'- gGCGcACgaGUCGCGCGuaCUCGCCGUc -3'
miRNA:   3'- aCGUuUGa-CGGCGUGCcgGAGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 9515 0.69 0.295162
Target:  5'- cGCGGGCUGaauCGUGCGGCCgugCGCgGc -3'
miRNA:   3'- aCGUUUGACg--GCGUGCCGGa--GCGgCa -5'
24124 5' -59.4 NC_005263.2 + 9980 0.67 0.367623
Target:  5'- gUGcCGGGCagGCCGUucagcaugacgaucuCGGCCUUGCCGa -3'
miRNA:   3'- -AC-GUUUGa-CGGCGu--------------GCCGGAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 10174 0.67 0.366763
Target:  5'- cGCAccGGCUGCCgGCgGCGcGCCUgCGCCc- -3'
miRNA:   3'- aCGU--UUGACGG-CG-UGC-CGGA-GCGGca -5'
24124 5' -59.4 NC_005263.2 + 10370 0.68 0.349864
Target:  5'- aGCAAACcauugaGCCGcCACGcGCCggGCCGg -3'
miRNA:   3'- aCGUUUGa-----CGGC-GUGC-CGGagCGGCa -5'
24124 5' -59.4 NC_005263.2 + 10481 0.71 0.206136
Target:  5'- aGCAggUcGCCGCGCaGGUgCUUGCCGUc -3'
miRNA:   3'- aCGUuuGaCGGCGUG-CCG-GAGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 10741 0.69 0.295162
Target:  5'- cGCAGACUcgagcGCaucgaGCACGGCCgCGaCCGa -3'
miRNA:   3'- aCGUUUGA-----CGg----CGUGCCGGaGC-GGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.