miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24124 5' -59.4 NC_005263.2 + 46924 0.67 0.401298
Target:  5'- cGC--GCUGCCGCGCagcacgaGGCacaagUCGCCGc -3'
miRNA:   3'- aCGuuUGACGGCGUG-------CCGg----AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 46664 0.73 0.157644
Target:  5'- cGCGAGC-GCCGCGaaGCCUCGCgCGc -3'
miRNA:   3'- aCGUUUGaCGGCGUgcCGGAGCG-GCa -5'
24124 5' -59.4 NC_005263.2 + 46151 0.68 0.349864
Target:  5'- aGCAgaucGACgcgGuuGC-CGGCgUCGCCGg -3'
miRNA:   3'- aCGU----UUGa--CggCGuGCCGgAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 46059 0.7 0.253769
Target:  5'- cGCGAACUaCCGCGCgGGCgUCGaCGUg -3'
miRNA:   3'- aCGUUUGAcGGCGUG-CCGgAGCgGCA- -5'
24124 5' -59.4 NC_005263.2 + 45767 0.71 0.211638
Target:  5'- cUGCGcAACgGCCGCACGGUgCUCGCg-- -3'
miRNA:   3'- -ACGU-UUGaCGGCGUGCCG-GAGCGgca -5'
24124 5' -59.4 NC_005263.2 + 45737 0.66 0.411406
Target:  5'- cGCucGgUGCUgaggguugGCACGGCCUgCGCUGg -3'
miRNA:   3'- aCGuuUgACGG--------CGUGCCGGA-GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 45692 0.69 0.285767
Target:  5'- gGCAcGCUGCCGCuguacggcgaccaaGCGaccGCCggCGCCGUc -3'
miRNA:   3'- aCGUuUGACGGCG--------------UGC---CGGa-GCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 45517 0.67 0.366763
Target:  5'- gGCGaccuucacGACUGCCuGgACGGCCgugaUUGCCGa -3'
miRNA:   3'- aCGU--------UUGACGG-CgUGCCGG----AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 45443 0.72 0.190367
Target:  5'- cUGCAGGCUGCCGguguCGCcGCCgauaCGCCGg -3'
miRNA:   3'- -ACGUUUGACGGC----GUGcCGGa---GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 44874 0.65 0.458277
Target:  5'- gUGCAGauGCUGCCcggcgucaucgggGCgggcgGCGGCCggGCCGg -3'
miRNA:   3'- -ACGUU--UGACGG-------------CG-----UGCCGGagCGGCa -5'
24124 5' -59.4 NC_005263.2 + 44790 0.73 0.153407
Target:  5'- cGCAGACguugaacaCCGCGCGGCCgCGCCc- -3'
miRNA:   3'- aCGUUUGac------GGCGUGCCGGaGCGGca -5'
24124 5' -59.4 NC_005263.2 + 44555 0.67 0.358244
Target:  5'- gGCcGACgcGCUGCGCGGCaCUgCGCUGa -3'
miRNA:   3'- aCGuUUGa-CGGCGUGCCG-GA-GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 44164 0.72 0.175668
Target:  5'- cUGCAGAacggcgccaacCUGCCGguCGGCCU-GCCGc -3'
miRNA:   3'- -ACGUUU-----------GACGGCguGCCGGAgCGGCa -5'
24124 5' -59.4 NC_005263.2 + 43500 0.67 0.378922
Target:  5'- gGCAccucgaAGCUGCCgGCGCGGCCguUCauggaaaagacgauuGCCGa -3'
miRNA:   3'- aCGU------UUGACGG-CGUGCCGG--AG---------------CGGCa -5'
24124 5' -59.4 NC_005263.2 + 42496 1.07 0.00039
Target:  5'- cUGCAAACUGCCGCACGGCCUCGCCGUg -3'
miRNA:   3'- -ACGUUUGACGGCGUGCCGGAGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 41847 0.68 0.349864
Target:  5'- aGuCAAGCUGCCcgacgGCACGaccgcGCCUgGCCGc -3'
miRNA:   3'- aC-GUUUGACGG-----CGUGC-----CGGAgCGGCa -5'
24124 5' -59.4 NC_005263.2 + 41803 0.66 0.449452
Target:  5'- uUGCAAACcggGCgCGC-CGGUgUUGCUGUu -3'
miRNA:   3'- -ACGUUUGa--CG-GCGuGCCGgAGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 41535 0.67 0.375421
Target:  5'- uUGCGc-CUGCgcaaaCGCGCGGCg-CGCCGUg -3'
miRNA:   3'- -ACGUuuGACG-----GCGUGCCGgaGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 41251 0.68 0.341624
Target:  5'- cGCGAGggcuacCUGUCGC-CGGUCgugUCGCCGUc -3'
miRNA:   3'- aCGUUU------GACGGCGuGCCGG---AGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 40812 0.66 0.429231
Target:  5'- cGCAGACcugGCCGCA-GGCacgcgucaugucgCUCGCCc- -3'
miRNA:   3'- aCGUUUGa--CGGCGUgCCG-------------GAGCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.