miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24124 5' -59.4 NC_005263.2 + 40812 0.66 0.429231
Target:  5'- cGCAGACcugGCCGCA-GGCacgcgucaugucgCUCGCCc- -3'
miRNA:   3'- aCGUUUGa--CGGCGUgCCG-------------GAGCGGca -5'
24124 5' -59.4 NC_005263.2 + 38747 0.66 0.420731
Target:  5'- cGCA----GCCGC-CGGCgCUCGCCu- -3'
miRNA:   3'- aCGUuugaCGGCGuGCCG-GAGCGGca -5'
24124 5' -59.4 NC_005263.2 + 32536 0.66 0.420731
Target:  5'- cGCGgcGACUGUCgGCAggcCGGCCacgcgcuuacUCGCCGa -3'
miRNA:   3'- aCGU--UUGACGG-CGU---GCCGG----------AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 26136 0.66 0.420731
Target:  5'- gGCAGAuCUGCgCGCGCagcauGCCUgCGUCGUu -3'
miRNA:   3'- aCGUUU-GACG-GCGUGc----CGGA-GCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 3766 0.66 0.420731
Target:  5'- cGCGGGCaGCgGCACGGUgUucucccacaCGCCGa -3'
miRNA:   3'- aCGUUUGaCGgCGUGCCGgA---------GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 37009 0.66 0.419792
Target:  5'- aGCGgaacAGCUGCuuaCGCGCGGCgUCaucccacgcuuuuGCCGUg -3'
miRNA:   3'- aCGU----UUGACG---GCGUGCCGgAG-------------CGGCA- -5'
24124 5' -59.4 NC_005263.2 + 17816 0.66 0.41512
Target:  5'- gGCGGccgaggaUGCCGCgcGCGGCCcgauugcgcagcgcuUCGCCGa -3'
miRNA:   3'- aCGUUug-----ACGGCG--UGCCGG---------------AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 35912 0.66 0.411406
Target:  5'- gGaCGAGCUGCCGCAUcGCUUCaucgcgacacgGCCGc -3'
miRNA:   3'- aC-GUUUGACGGCGUGcCGGAG-----------CGGCa -5'
24124 5' -59.4 NC_005263.2 + 6243 0.66 0.411406
Target:  5'- cGCucGCgGCCagGCGCGGUCgUGCCGUc -3'
miRNA:   3'- aCGuuUGaCGG--CGUGCCGGaGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 2684 0.66 0.411406
Target:  5'- gUGguAGCUGaUCGCGCGGCCgcUCGgCa- -3'
miRNA:   3'- -ACguUUGAC-GGCGUGCCGG--AGCgGca -5'
24124 5' -59.4 NC_005263.2 + 45737 0.66 0.411406
Target:  5'- cGCucGgUGCUgaggguugGCACGGCCUgCGCUGg -3'
miRNA:   3'- aCGuuUgACGG--------CGUGCCGGA-GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 24784 0.66 0.41048
Target:  5'- gUGCGAAUgcaacggUGCCGC-CcGCCUggcCGCCGUa -3'
miRNA:   3'- -ACGUUUG-------ACGGCGuGcCGGA---GCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 35548 0.67 0.40221
Target:  5'- cGCGGGCgGgCGCuACGGCgC-CGCCGg -3'
miRNA:   3'- aCGUUUGaCgGCG-UGCCG-GaGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 46924 0.67 0.401298
Target:  5'- cGC--GCUGCCGCGCagcacgaGGCacaagUCGCCGc -3'
miRNA:   3'- aCGuuUGACGGCGUG-------CCGg----AGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 21966 0.67 0.393146
Target:  5'- cGCAGGCaUGCUGCGCGcGCagaUCuGCCa- -3'
miRNA:   3'- aCGUUUG-ACGGCGUGC-CGg--AG-CGGca -5'
24124 5' -59.4 NC_005263.2 + 39706 0.67 0.392247
Target:  5'- cGCGAGCUggaaaugGCCgGCGCgGGCCgCGUCGa -3'
miRNA:   3'- aCGUUUGA-------CGG-CGUG-CCGGaGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 7794 0.67 0.384216
Target:  5'- cGCGca-UGCgGUACGGCUUUGCCu- -3'
miRNA:   3'- aCGUuugACGgCGUGCCGGAGCGGca -5'
24124 5' -59.4 NC_005263.2 + 43500 0.67 0.378922
Target:  5'- gGCAccucgaAGCUGCCgGCGCGGCCguUCauggaaaagacgauuGCCGa -3'
miRNA:   3'- aCGU------UUGACGG-CGUGCCGG--AG---------------CGGCa -5'
24124 5' -59.4 NC_005263.2 + 24766 0.67 0.375421
Target:  5'- cUGCu-ACUGUCGCucacggGCGGCgucggcggCUCGCCGg -3'
miRNA:   3'- -ACGuuUGACGGCG------UGCCG--------GAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 41535 0.67 0.375421
Target:  5'- uUGCGc-CUGCgcaaaCGCGCGGCg-CGCCGUg -3'
miRNA:   3'- -ACGUuuGACG-----GCGUGCCGgaGCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.