Results 41 - 60 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 37955 | 0.67 | 0.375421 |
Target: 5'- cGCAAccgGCcgaUGCCGCGcCGGCUggCGCUGa -3' miRNA: 3'- aCGUU---UG---ACGGCGU-GCCGGa-GCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 41535 | 0.67 | 0.375421 |
Target: 5'- uUGCGc-CUGCgcaaaCGCGCGGCg-CGCCGUg -3' miRNA: 3'- -ACGUuuGACG-----GCGUGCCGgaGCGGCA- -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 24766 | 0.67 | 0.375421 |
Target: 5'- cUGCu-ACUGUCGCucacggGCGGCgucggcggCUCGCCGg -3' miRNA: 3'- -ACGuuUGACGGCG------UGCCG--------GAGCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 36088 | 0.67 | 0.373678 |
Target: 5'- cGCAAGCUugagcgcGCCGUcgcguugAUGGCCgCGUCGUa -3' miRNA: 3'- aCGUUUGA-------CGGCG-------UGCCGGaGCGGCA- -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 9980 | 0.67 | 0.367623 |
Target: 5'- gUGcCGGGCagGCCGUucagcaugacgaucuCGGCCUUGCCGa -3' miRNA: 3'- -AC-GUUUGa-CGGCGu--------------GCCGGAGCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 45517 | 0.67 | 0.366763 |
Target: 5'- gGCGaccuucacGACUGCCuGgACGGCCgugaUUGCCGa -3' miRNA: 3'- aCGU--------UUGACGG-CgUGCCGG----AGCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 10174 | 0.67 | 0.366763 |
Target: 5'- cGCAccGGCUGCCgGCgGCGcGCCUgCGCCc- -3' miRNA: 3'- aCGU--UUGACGG-CG-UGC-CGGA-GCGGca -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 27470 | 0.67 | 0.366763 |
Target: 5'- cGCGGccACUGCgGcCACGGCCUUGacuuCGUu -3' miRNA: 3'- aCGUU--UGACGgC-GUGCCGGAGCg---GCA- -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 14197 | 0.67 | 0.358244 |
Target: 5'- aGCAAGCguuCCGCgACGGCg-UGCCGUu -3' miRNA: 3'- aCGUUUGac-GGCG-UGCCGgaGCGGCA- -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 44555 | 0.67 | 0.358244 |
Target: 5'- gGCcGACgcGCUGCGCGGCaCUgCGCUGa -3' miRNA: 3'- aCGuUUGa-CGGCGUGCCG-GA-GCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 37769 | 0.67 | 0.356556 |
Target: 5'- gGCAAGCUGCCGCGCcuGCgCgagaucgacgagCGUCGUu -3' miRNA: 3'- aCGUUUGACGGCGUGc-CG-Ga-----------GCGGCA- -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 23560 | 0.68 | 0.349864 |
Target: 5'- cGCAGccGCcGCCGCcCGcGCCgcCGCCGUu -3' miRNA: 3'- aCGUU--UGaCGGCGuGC-CGGa-GCGGCA- -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 46151 | 0.68 | 0.349864 |
Target: 5'- aGCAgaucGACgcgGuuGC-CGGCgUCGCCGg -3' miRNA: 3'- aCGU----UUGa--CggCGuGCCGgAGCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 30674 | 0.68 | 0.349864 |
Target: 5'- gUGCAucCUGCaUGCGCGGgCagGCCGg -3' miRNA: 3'- -ACGUuuGACG-GCGUGCCgGagCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 10370 | 0.68 | 0.349864 |
Target: 5'- aGCAAACcauugaGCCGcCACGcGCCggGCCGg -3' miRNA: 3'- aCGUUUGa-----CGGC-GUGC-CGGagCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 41847 | 0.68 | 0.349864 |
Target: 5'- aGuCAAGCUGCCcgacgGCACGaccgcGCCUgGCCGc -3' miRNA: 3'- aC-GUUUGACGG-----CGUGC-----CGGAgCGGCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 29183 | 0.68 | 0.341624 |
Target: 5'- aGCGcuCgUGCCGCGCGGUCaCGCuCGa -3' miRNA: 3'- aCGUuuG-ACGGCGUGCCGGaGCG-GCa -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 41251 | 0.68 | 0.341624 |
Target: 5'- cGCGAGggcuacCUGUCGC-CGGUCgugUCGCCGUc -3' miRNA: 3'- aCGUUU------GACGGCGuGCCGG---AGCGGCA- -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 20863 | 0.68 | 0.341624 |
Target: 5'- cGCGAGC-GUCGCaACGGCgCUgCGCCa- -3' miRNA: 3'- aCGUUUGaCGGCG-UGCCG-GA-GCGGca -5' |
|||||||
24124 | 5' | -59.4 | NC_005263.2 | + | 20934 | 0.68 | 0.333526 |
Target: 5'- cGCAGACgaaUGCgGUgaugACGGCCgcgCGCUGUc -3' miRNA: 3'- aCGUUUG---ACGgCG----UGCCGGa--GCGGCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home