miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24126 5' -54.2 NC_005263.2 + 24260 0.67 0.697698
Target:  5'- aGCACUgGACAgucacgaacaacacgACCGGCgcuuucgcggcgaCGAUCAAGAc -3'
miRNA:   3'- gCGUGG-CUGUa--------------UGGCCG-------------GCUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 24642 0.66 0.719436
Target:  5'- aGCACUGACAgucgUACCGGgCGAg----- -3'
miRNA:   3'- gCGUGGCUGU----AUGGCCgGCUaguucu -5'
24126 5' -54.2 NC_005263.2 + 24704 0.76 0.250674
Target:  5'- gCGCGCCGaACGUGCCGGgCGGcgCAGGc -3'
miRNA:   3'- -GCGUGGC-UGUAUGGCCgGCUa-GUUCu -5'
24126 5' -54.2 NC_005263.2 + 25229 0.67 0.708606
Target:  5'- cCGUGCCGAUc--CCGGCCGA-CGAa- -3'
miRNA:   3'- -GCGUGGCUGuauGGCCGGCUaGUUcu -5'
24126 5' -54.2 NC_005263.2 + 25289 0.67 0.673488
Target:  5'- gCGCGCgCGACAgcgugaucuuuCCGucGUCGGUCGAGAa -3'
miRNA:   3'- -GCGUG-GCUGUau---------GGC--CGGCUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 25790 0.7 0.521568
Target:  5'- gCGCGCUGAgCGUGCCGGCauaaAUCAAa- -3'
miRNA:   3'- -GCGUGGCU-GUAUGGCCGgc--UAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 26002 0.66 0.750304
Target:  5'- gCGUGCCGGCGgcaGCCGucacgccugguguGCCGGUCAc-- -3'
miRNA:   3'- -GCGUGGCUGUa--UGGC-------------CGGCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 26875 0.68 0.642411
Target:  5'- cCGCGCCGucgauGCGaaaGCCGGUCGAcgaCAGGAu -3'
miRNA:   3'- -GCGUGGC-----UGUa--UGGCCGGCUa--GUUCU- -5'
24126 5' -54.2 NC_005263.2 + 27130 0.68 0.653531
Target:  5'- uGCACCGAaccCGUACCGGCUu-UCGu-- -3'
miRNA:   3'- gCGUGGCU---GUAUGGCCGGcuAGUucu -5'
24126 5' -54.2 NC_005263.2 + 27222 0.66 0.761757
Target:  5'- uGCACCGccgcucgugaGCGUgaucgcgccGCCGGCCGAUagcguuAGGu -3'
miRNA:   3'- gCGUGGC----------UGUA---------UGGCCGGCUAgu----UCU- -5'
24126 5' -54.2 NC_005263.2 + 27386 0.66 0.719436
Target:  5'- gGCgGCCGGCGcgcugACCGGCUGcGUCAcGAc -3'
miRNA:   3'- gCG-UGGCUGUa----UGGCCGGC-UAGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 27697 0.71 0.436461
Target:  5'- gCGCGCCGGCGccGgCGGCCGcauaggcuugcucgGUCGAGGc -3'
miRNA:   3'- -GCGUGGCUGUa-UgGCCGGC--------------UAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 28360 0.67 0.708606
Target:  5'- aGCGCCGcCAgcgcGCCaGcGCCGAUCGcauAGAa -3'
miRNA:   3'- gCGUGGCuGUa---UGG-C-CGGCUAGU---UCU- -5'
24126 5' -54.2 NC_005263.2 + 29712 0.69 0.539827
Target:  5'- gCGCACCcGCGUGCCGGCgaagaacuucgccuUGAUCGu-- -3'
miRNA:   3'- -GCGUGGcUGUAUGGCCG--------------GCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 30303 0.66 0.740821
Target:  5'- aGCGCCgGGCGcgGCCGGCgucuugacgaCGAUCGAu- -3'
miRNA:   3'- gCGUGG-CUGUa-UGGCCG----------GCUAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 30605 0.67 0.663521
Target:  5'- cCGCcugaucgAUCGACGcGCCGcGCgCGAUCAGGGc -3'
miRNA:   3'- -GCG-------UGGCUGUaUGGC-CG-GCUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 30807 0.69 0.597938
Target:  5'- gGCGgCGACGUGCuCGGCgGA-CAGGu -3'
miRNA:   3'- gCGUgGCUGUAUG-GCCGgCUaGUUCu -5'
24126 5' -54.2 NC_005263.2 + 31588 0.73 0.365125
Target:  5'- -aCGCCGACAUuuGCCGGuuGGUCAu-- -3'
miRNA:   3'- gcGUGGCUGUA--UGGCCggCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 31711 0.7 0.521568
Target:  5'- cCGCACCcGCgAUGCCGGCCagcuucAUCAGGc -3'
miRNA:   3'- -GCGUGGcUG-UAUGGCCGGc-----UAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 32014 0.66 0.739762
Target:  5'- aGCugCGcgggugaACA-GCCGGCCGAUCu--- -3'
miRNA:   3'- gCGugGC-------UGUaUGGCCGGCUAGuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.