miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24126 5' -54.2 NC_005263.2 + 11927 0.67 0.697698
Target:  5'- uGCGauauCCGGCA-GCCGGCCGGuaUCGAc- -3'
miRNA:   3'- gCGU----GGCUGUaUGGCCGGCU--AGUUcu -5'
24126 5' -54.2 NC_005263.2 + 14078 0.72 0.382866
Target:  5'- cCGCGCCGGCccaugucggcugGUACCGGCUGcgCGGc- -3'
miRNA:   3'- -GCGUGGCUG------------UAUGGCCGGCuaGUUcu -5'
24126 5' -54.2 NC_005263.2 + 15674 0.66 0.772028
Target:  5'- uGCGCuUGGCGUGCCaagagcGGCCGG-CGAGc -3'
miRNA:   3'- gCGUG-GCUGUAUGG------CCGGCUaGUUCu -5'
24126 5' -54.2 NC_005263.2 + 17192 0.68 0.641298
Target:  5'- gGCGCUcgaguggggauggGACAaGCUGGCCGGcagCAAGAu -3'
miRNA:   3'- gCGUGG-------------CUGUaUGGCCGGCUa--GUUCU- -5'
24126 5' -54.2 NC_005263.2 + 17693 0.74 0.315388
Target:  5'- cCGCACCGACcUGCUGcaGCCGGUCGc-- -3'
miRNA:   3'- -GCGUGGCUGuAUGGC--CGGCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 17751 0.69 0.553935
Target:  5'- gGCGCCGGCGgcaGCgCGGCCGcgCucGGc -3'
miRNA:   3'- gCGUGGCUGUa--UG-GCCGGCuaGuuCU- -5'
24126 5' -54.2 NC_005263.2 + 18103 0.66 0.740821
Target:  5'- aGCucaaGCCGACGaaGCCGGCCGAg----- -3'
miRNA:   3'- gCG----UGGCUGUa-UGGCCGGCUaguucu -5'
24126 5' -54.2 NC_005263.2 + 18745 0.66 0.760723
Target:  5'- gGCGCCGGguUACCGGCgccugcuCGcgCAcccGGAa -3'
miRNA:   3'- gCGUGGCUguAUGGCCG-------GCuaGU---UCU- -5'
24126 5' -54.2 NC_005263.2 + 18889 0.74 0.315388
Target:  5'- gCGCGCCGACGgcaaauacgcGCCGGCCugcGUCGAGc -3'
miRNA:   3'- -GCGUGGCUGUa---------UGGCCGGc--UAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 19016 0.66 0.761757
Target:  5'- aCGCACUGACucgcGUAgcgaCGGCCGAUgcgcgccgcccCGAGGa -3'
miRNA:   3'- -GCGUGGCUG----UAUg---GCCGGCUA-----------GUUCU- -5'
24126 5' -54.2 NC_005263.2 + 20347 0.72 0.40117
Target:  5'- gGCACCGAU--ACCGGCCuGAUCc--- -3'
miRNA:   3'- gCGUGGCUGuaUGGCCGG-CUAGuucu -5'
24126 5' -54.2 NC_005263.2 + 20570 0.67 0.675699
Target:  5'- uGC-CCGGCcUGCCGGCCGugcCGAcGGg -3'
miRNA:   3'- gCGuGGCUGuAUGGCCGGCua-GUU-CU- -5'
24126 5' -54.2 NC_005263.2 + 20732 0.67 0.697698
Target:  5'- gCGCGCCGGCcgccGCCGcGCCGcUCGc-- -3'
miRNA:   3'- -GCGUGGCUGua--UGGC-CGGCuAGUucu -5'
24126 5' -54.2 NC_005263.2 + 20997 0.73 0.339597
Target:  5'- gCGCGUCGACGUGCCGGCguuucaggCGAUCAuccAGGu -3'
miRNA:   3'- -GCGUGGCUGUAUGGCCG--------GCUAGU---UCU- -5'
24126 5' -54.2 NC_005263.2 + 22412 0.68 0.631282
Target:  5'- aCGCGCCGcCGUGCUcGCCGuGUCcGGGg -3'
miRNA:   3'- -GCGUGGCuGUAUGGcCGGC-UAGuUCU- -5'
24126 5' -54.2 NC_005263.2 + 22685 0.68 0.641298
Target:  5'- cCGCACCGcACGcGCCGaggauggcugucuGCCaGGUCGAGGc -3'
miRNA:   3'- -GCGUGGC-UGUaUGGC-------------CGG-CUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 23034 0.69 0.564861
Target:  5'- gCGCcacCCGAauUGCCGGUCGAcgUCGGGAu -3'
miRNA:   3'- -GCGu--GGCUguAUGGCCGGCU--AGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 23168 0.66 0.751352
Target:  5'- gCGCACCGcCGUGCCGccgccaCCGAaCGGGu -3'
miRNA:   3'- -GCGUGGCuGUAUGGCc-----GGCUaGUUCu -5'
24126 5' -54.2 NC_005263.2 + 23269 0.69 0.543073
Target:  5'- gCGCACCGGCAccgccguugccGCCGGCCGuau-AGGc -3'
miRNA:   3'- -GCGUGGCUGUa----------UGGCCGGCuaguUCU- -5'
24126 5' -54.2 NC_005263.2 + 23422 0.68 0.642411
Target:  5'- gCGCGCCGcCGuUACCGGCgccccCGAUCGu-- -3'
miRNA:   3'- -GCGUGGCuGU-AUGGCCG-----GCUAGUucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.