miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24126 5' -54.2 NC_005263.2 + 645 0.8 0.137841
Target:  5'- aCGCuACgCGACGUGCCGGCCaGAUCGAa- -3'
miRNA:   3'- -GCG-UG-GCUGUAUGGCCGG-CUAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 865 0.69 0.597938
Target:  5'- gCGUAcCCGuCGUGCCGGCCGGcgcuUCGu-- -3'
miRNA:   3'- -GCGU-GGCuGUAUGGCCGGCU----AGUucu -5'
24126 5' -54.2 NC_005263.2 + 1684 0.67 0.708606
Target:  5'- gCGCGCCGcCAguucggUAUUGGUCGGUUggGGc -3'
miRNA:   3'- -GCGUGGCuGU------AUGGCCGGCUAGuuCU- -5'
24126 5' -54.2 NC_005263.2 + 1877 0.66 0.739762
Target:  5'- gCGCGCCuGGC---CCGgauuggcgggguuGCCGAUCAGGAa -3'
miRNA:   3'- -GCGUGG-CUGuauGGC-------------CGGCUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 1946 0.67 0.686725
Target:  5'- gGCACCGGCGacGCCGGCaaccgcguCGAUCu--- -3'
miRNA:   3'- gCGUGGCUGUa-UGGCCG--------GCUAGuucu -5'
24126 5' -54.2 NC_005263.2 + 2691 0.7 0.51094
Target:  5'- uCGCGCCGGCGg--CGGCCGA-CAGa- -3'
miRNA:   3'- -GCGUGGCUGUaugGCCGGCUaGUUcu -5'
24126 5' -54.2 NC_005263.2 + 2757 0.68 0.631282
Target:  5'- uCGCgGCCGcCGUGCCGGUCGuguucGUCAcGAc -3'
miRNA:   3'- -GCG-UGGCuGUAUGGCCGGC-----UAGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 2766 0.68 0.642411
Target:  5'- uCGCgaccgACCGGCAUcacgaccucgcgACCgGGCUGGUCGAGu -3'
miRNA:   3'- -GCG-----UGGCUGUA------------UGG-CCGGCUAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 3148 0.66 0.761757
Target:  5'- aGCACCGACGaGCacguGGCCGGgcuUCGuggcgcGGAa -3'
miRNA:   3'- gCGUGGCUGUaUGg---CCGGCU---AGU------UCU- -5'
24126 5' -54.2 NC_005263.2 + 3339 0.69 0.586871
Target:  5'- gCGCGCCGcCGgcGCCGcGCgCGGUCGAGc -3'
miRNA:   3'- -GCGUGGCuGUa-UGGC-CG-GCUAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 5777 0.66 0.751352
Target:  5'- aCGCuucggUCGGCAccUugCGGCCGGUCGc-- -3'
miRNA:   3'- -GCGu----GGCUGU--AugGCCGGCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 6074 0.72 0.4021
Target:  5'- gCGCGCCGACAggaagccuuggcgcgGCCGGCCGcacugccggcacGUCAu-- -3'
miRNA:   3'- -GCGUGGCUGUa--------------UGGCCGGC------------UAGUucu -5'
24126 5' -54.2 NC_005263.2 + 8848 0.68 0.653531
Target:  5'- aGCAUCGcgcGCAgcUCGGCCGA-CGGGAu -3'
miRNA:   3'- gCGUGGC---UGUauGGCCGGCUaGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 8981 0.72 0.410529
Target:  5'- uGCGCCGACGUugauCUGGCCGGcCAc-- -3'
miRNA:   3'- gCGUGGCUGUAu---GGCCGGCUaGUucu -5'
24126 5' -54.2 NC_005263.2 + 9072 0.69 0.575842
Target:  5'- aGCGCCucGACGUGCCaguucgGGUCGAUCGGc- -3'
miRNA:   3'- gCGUGG--CUGUAUGG------CCGGCUAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 9091 0.72 0.40117
Target:  5'- gCGCgACCGGCAUAcCCGGCUgGAUCGu-- -3'
miRNA:   3'- -GCG-UGGCUGUAU-GGCCGG-CUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 9430 0.7 0.489962
Target:  5'- cCGUGCCG-Cc--CgGGCCGAUCAAGAc -3'
miRNA:   3'- -GCGUGGCuGuauGgCCGGCUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 10173 0.73 0.373924
Target:  5'- gCGCACCGGC-UGCCGGCgGcgCGc-- -3'
miRNA:   3'- -GCGUGGCUGuAUGGCCGgCuaGUucu -5'
24126 5' -54.2 NC_005263.2 + 10389 0.74 0.315388
Target:  5'- aCGCGCCGG---GCCGGCCGG-CGAGc -3'
miRNA:   3'- -GCGUGGCUguaUGGCCGGCUaGUUCu -5'
24126 5' -54.2 NC_005263.2 + 10677 0.74 0.307614
Target:  5'- gCGCGCCGACGUAUgacgacgaggaCGGCCGcgCGAc- -3'
miRNA:   3'- -GCGUGGCUGUAUG-----------GCCGGCuaGUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.