miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24126 5' -54.2 NC_005263.2 + 38428 0.86 0.04868
Target:  5'- uGCGCCGGCGUgacGCCGGCCacGGUCAAGAc -3'
miRNA:   3'- gCGUGGCUGUA---UGGCCGG--CUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 2757 0.68 0.631282
Target:  5'- uCGCgGCCGcCGUGCCGGUCGuguucGUCAcGAc -3'
miRNA:   3'- -GCG-UGGCuGUAUGGCCGGC-----UAGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 22685 0.68 0.641298
Target:  5'- cCGCACCGcACGcGCCGaggauggcugucuGCCaGGUCGAGGc -3'
miRNA:   3'- -GCGUGGC-UGUaUGGC-------------CGG-CUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 15674 0.66 0.772028
Target:  5'- uGCGCuUGGCGUGCCaagagcGGCCGG-CGAGc -3'
miRNA:   3'- gCGUG-GCUGUAUGG------CCGGCUaGUUCu -5'
24126 5' -54.2 NC_005263.2 + 45336 0.73 0.339597
Target:  5'- uCGCGaggUCGugAUGCCGGUCGGUCGcGAc -3'
miRNA:   3'- -GCGU---GGCugUAUGGCCGGCUAGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 31588 0.73 0.365125
Target:  5'- -aCGCCGACAUuuGCCGGuuGGUCAu-- -3'
miRNA:   3'- gcGUGGCUGUA--UGGCCggCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 14078 0.72 0.382866
Target:  5'- cCGCGCCGGCccaugucggcugGUACCGGCUGcgCGGc- -3'
miRNA:   3'- -GCGUGGCUG------------UAUGGCCGGCuaGUUcu -5'
24126 5' -54.2 NC_005263.2 + 9091 0.72 0.40117
Target:  5'- gCGCgACCGGCAUAcCCGGCUgGAUCGu-- -3'
miRNA:   3'- -GCG-UGGCUGUAU-GGCCGG-CUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 39007 0.71 0.479625
Target:  5'- uGC-CCGuguuCGUgaACCGGCCGAUCGAc- -3'
miRNA:   3'- gCGuGGCu---GUA--UGGCCGGCUAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 39232 0.68 0.631282
Target:  5'- uGCACCGGCAgcACgGGCCGcgUAu-- -3'
miRNA:   3'- gCGUGGCUGUa-UGgCCGGCuaGUucu -5'
24126 5' -54.2 NC_005263.2 + 31711 0.7 0.521568
Target:  5'- cCGCACCcGCgAUGCCGGCCagcuucAUCAGGc -3'
miRNA:   3'- -GCGUGGcUG-UAUGGCCGGc-----UAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 8981 0.72 0.410529
Target:  5'- uGCGCCGACGUugauCUGGCCGGcCAc-- -3'
miRNA:   3'- gCGUGGCUGUAu---GGCCGGCUaGUucu -5'
24126 5' -54.2 NC_005263.2 + 42009 0.78 0.172158
Target:  5'- aCGUGCCGGCAgugcgGCCGGCCGcgcCAAGGc -3'
miRNA:   3'- -GCGUGGCUGUa----UGGCCGGCua-GUUCU- -5'
24126 5' -54.2 NC_005263.2 + 23269 0.69 0.543073
Target:  5'- gCGCACCGGCAccgccguugccGCCGGCCGuau-AGGc -3'
miRNA:   3'- -GCGUGGCUGUa----------UGGCCGGCuaguUCU- -5'
24126 5' -54.2 NC_005263.2 + 17693 0.74 0.315388
Target:  5'- cCGCACCGACcUGCUGcaGCCGGUCGc-- -3'
miRNA:   3'- -GCGUGGCUGuAUGGC--CGGCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 20347 0.72 0.40117
Target:  5'- gGCACCGAU--ACCGGCCuGAUCc--- -3'
miRNA:   3'- gCGUGGCUGuaUGGCCGG-CUAGuucu -5'
24126 5' -54.2 NC_005263.2 + 23034 0.69 0.564861
Target:  5'- gCGCcacCCGAauUGCCGGUCGAcgUCGGGAu -3'
miRNA:   3'- -GCGu--GGCUguAUGGCCGGCU--AGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 40263 0.68 0.631282
Target:  5'- aGUGCgCGACGcgGCCGGCCaaccGAUCGAcGAa -3'
miRNA:   3'- gCGUG-GCUGUa-UGGCCGG----CUAGUU-CU- -5'
24126 5' -54.2 NC_005263.2 + 20997 0.73 0.339597
Target:  5'- gCGCGUCGACGUGCCGGCguuucaggCGAUCAuccAGGu -3'
miRNA:   3'- -GCGUGGCUGUAUGGCCG--------GCUAGU---UCU- -5'
24126 5' -54.2 NC_005263.2 + 10173 0.73 0.373924
Target:  5'- gCGCACCGGC-UGCCGGCgGcgCGc-- -3'
miRNA:   3'- -GCGUGGCUGuAUGGCCGgCuaGUucu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.