miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24126 5' -54.2 NC_005263.2 + 41984 1.09 0.001207
Target:  5'- gCGCACCGACAUACCGGCCGAUCAAGAc -3'
miRNA:   3'- -GCGUGGCUGUAUGGCCGGCUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 38428 0.86 0.04868
Target:  5'- uGCGCCGGCGUgacGCCGGCCacGGUCAAGAc -3'
miRNA:   3'- gCGUGGCUGUA---UGGCCGG--CUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 645 0.8 0.137841
Target:  5'- aCGCuACgCGACGUGCCGGCCaGAUCGAa- -3'
miRNA:   3'- -GCG-UG-GCUGUAUGGCCGG-CUAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 42009 0.78 0.172158
Target:  5'- aCGUGCCGGCAgugcgGCCGGCCGcgcCAAGGc -3'
miRNA:   3'- -GCGUGGCUGUa----UGGCCGGCua-GUUCU- -5'
24126 5' -54.2 NC_005263.2 + 47311 0.77 0.197313
Target:  5'- uGCGCCGGCG-GCCGGCaCGcUCAAGGu -3'
miRNA:   3'- gCGUGGCUGUaUGGCCG-GCuAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 24704 0.76 0.250674
Target:  5'- gCGCGCCGaACGUGCCGGgCGGcgCAGGc -3'
miRNA:   3'- -GCGUGGC-UGUAUGGCCgGCUa-GUUCu -5'
24126 5' -54.2 NC_005263.2 + 35686 0.75 0.263361
Target:  5'- aGCGuCCGGCAggugauuggggucUGCCGGCCGG-CAAGGu -3'
miRNA:   3'- gCGU-GGCUGU-------------AUGGCCGGCUaGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 10677 0.74 0.307614
Target:  5'- gCGCGCCGACGUAUgacgacgaggaCGGCCGcgCGAc- -3'
miRNA:   3'- -GCGUGGCUGUAUG-----------GCCGGCuaGUUcu -5'
24126 5' -54.2 NC_005263.2 + 10389 0.74 0.315388
Target:  5'- aCGCGCCGG---GCCGGCCGG-CGAGc -3'
miRNA:   3'- -GCGUGGCUguaUGGCCGGCUaGUUCu -5'
24126 5' -54.2 NC_005263.2 + 18889 0.74 0.315388
Target:  5'- gCGCGCCGACGgcaaauacgcGCCGGCCugcGUCGAGc -3'
miRNA:   3'- -GCGUGGCUGUa---------UGGCCGGc--UAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 17693 0.74 0.315388
Target:  5'- cCGCACCGACcUGCUGcaGCCGGUCGc-- -3'
miRNA:   3'- -GCGUGGCUGuAUGGC--CGGCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 45336 0.73 0.339597
Target:  5'- uCGCGaggUCGugAUGCCGGUCGGUCGcGAc -3'
miRNA:   3'- -GCGU---GGCugUAUGGCCGGCUAGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 20997 0.73 0.339597
Target:  5'- gCGCGUCGACGUGCCGGCguuucaggCGAUCAuccAGGu -3'
miRNA:   3'- -GCGUGGCUGUAUGGCCG--------GCUAGU---UCU- -5'
24126 5' -54.2 NC_005263.2 + 31588 0.73 0.365125
Target:  5'- -aCGCCGACAUuuGCCGGuuGGUCAu-- -3'
miRNA:   3'- gcGUGGCUGUA--UGGCCggCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 10173 0.73 0.373924
Target:  5'- gCGCACCGGC-UGCCGGCgGcgCGc-- -3'
miRNA:   3'- -GCGUGGCUGuAUGGCCGgCuaGUucu -5'
24126 5' -54.2 NC_005263.2 + 14078 0.72 0.382866
Target:  5'- cCGCGCCGGCccaugucggcugGUACCGGCUGcgCGGc- -3'
miRNA:   3'- -GCGUGGCUG------------UAUGGCCGGCuaGUUcu -5'
24126 5' -54.2 NC_005263.2 + 20347 0.72 0.40117
Target:  5'- gGCACCGAU--ACCGGCCuGAUCc--- -3'
miRNA:   3'- gCGUGGCUGuaUGGCCGG-CUAGuucu -5'
24126 5' -54.2 NC_005263.2 + 9091 0.72 0.40117
Target:  5'- gCGCgACCGGCAUAcCCGGCUgGAUCGu-- -3'
miRNA:   3'- -GCG-UGGCUGUAU-GGCCGG-CUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 6074 0.72 0.4021
Target:  5'- gCGCGCCGACAggaagccuuggcgcgGCCGGCCGcacugccggcacGUCAu-- -3'
miRNA:   3'- -GCGUGGCUGUa--------------UGGCCGGC------------UAGUucu -5'
24126 5' -54.2 NC_005263.2 + 36005 0.72 0.410529
Target:  5'- gCGCGCCGcugcGCAUGCCaGGCCGcgacgaCAAGGu -3'
miRNA:   3'- -GCGUGGC----UGUAUGG-CCGGCua----GUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.