miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24126 5' -54.2 NC_005263.2 + 27130 0.68 0.653531
Target:  5'- uGCACCGAaccCGUACCGGCUu-UCGu-- -3'
miRNA:   3'- gCGUGGCU---GUAUGGCCGGcuAGUucu -5'
24126 5' -54.2 NC_005263.2 + 22685 0.68 0.641298
Target:  5'- cCGCACCGcACGcGCCGaggauggcugucuGCCaGGUCGAGGc -3'
miRNA:   3'- -GCGUGGC-UGUaUGGC-------------CGG-CUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 8981 0.72 0.410529
Target:  5'- uGCGCCGACGUugauCUGGCCGGcCAc-- -3'
miRNA:   3'- gCGUGGCUGUAu---GGCCGGCUaGUucu -5'
24126 5' -54.2 NC_005263.2 + 20997 0.73 0.339597
Target:  5'- gCGCGUCGACGUGCCGGCguuucaggCGAUCAuccAGGu -3'
miRNA:   3'- -GCGUGGCUGUAUGGCCG--------GCUAGU---UCU- -5'
24126 5' -54.2 NC_005263.2 + 18103 0.66 0.740821
Target:  5'- aGCucaaGCCGACGaaGCCGGCCGAg----- -3'
miRNA:   3'- gCG----UGGCUGUa-UGGCCGGCUaguucu -5'
24126 5' -54.2 NC_005263.2 + 1946 0.67 0.686725
Target:  5'- gGCACCGGCGacGCCGGCaaccgcguCGAUCu--- -3'
miRNA:   3'- gCGUGGCUGUa-UGGCCG--------GCUAGuucu -5'
24126 5' -54.2 NC_005263.2 + 2757 0.68 0.631282
Target:  5'- uCGCgGCCGcCGUGCCGGUCGuguucGUCAcGAc -3'
miRNA:   3'- -GCG-UGGCuGUAUGGCCGGC-----UAGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 17693 0.74 0.315388
Target:  5'- cCGCACCGACcUGCUGcaGCCGGUCGc-- -3'
miRNA:   3'- -GCGUGGCUGuAUGGC--CGGCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 20570 0.67 0.675699
Target:  5'- uGC-CCGGCcUGCCGGCCGugcCGAcGGg -3'
miRNA:   3'- gCGuGGCUGuAUGGCCGGCua-GUU-CU- -5'
24126 5' -54.2 NC_005263.2 + 42009 0.78 0.172158
Target:  5'- aCGUGCCGGCAgugcgGCCGGCCGcgcCAAGGc -3'
miRNA:   3'- -GCGUGGCUGUa----UGGCCGGCua-GUUCU- -5'
24126 5' -54.2 NC_005263.2 + 40263 0.68 0.631282
Target:  5'- aGUGCgCGACGcgGCCGGCCaaccGAUCGAcGAa -3'
miRNA:   3'- gCGUG-GCUGUa-UGGCCGG----CUAGUU-CU- -5'
24126 5' -54.2 NC_005263.2 + 37496 0.68 0.657974
Target:  5'- gGCGCCGACAUuCCGGCgcUugccaagcgcaugcaGAUCGAGc -3'
miRNA:   3'- gCGUGGCUGUAuGGCCG--G---------------CUAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 23269 0.69 0.543073
Target:  5'- gCGCACCGGCAccgccguugccGCCGGCCGuau-AGGc -3'
miRNA:   3'- -GCGUGGCUGUa----------UGGCCGGCuaguUCU- -5'
24126 5' -54.2 NC_005263.2 + 39007 0.71 0.479625
Target:  5'- uGC-CCGuguuCGUgaACCGGCCGAUCGAc- -3'
miRNA:   3'- gCGuGGCu---GUA--UGGCCGGCUAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 14078 0.72 0.382866
Target:  5'- cCGCGCCGGCccaugucggcugGUACCGGCUGcgCGGc- -3'
miRNA:   3'- -GCGUGGCUG------------UAUGGCCGGCuaGUUcu -5'
24126 5' -54.2 NC_005263.2 + 45336 0.73 0.339597
Target:  5'- uCGCGaggUCGugAUGCCGGUCGGUCGcGAc -3'
miRNA:   3'- -GCGU---GGCugUAUGGCCGGCUAGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 18745 0.66 0.760723
Target:  5'- gGCGCCGGguUACCGGCgccugcuCGcgCAcccGGAa -3'
miRNA:   3'- gCGUGGCUguAUGGCCG-------GCuaGU---UCU- -5'
24126 5' -54.2 NC_005263.2 + 26002 0.66 0.750304
Target:  5'- gCGUGCCGGCGgcaGCCGucacgccugguguGCCGGUCAc-- -3'
miRNA:   3'- -GCGUGGCUGUa--UGGC-------------CGGCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 11927 0.67 0.697698
Target:  5'- uGCGauauCCGGCA-GCCGGCCGGuaUCGAc- -3'
miRNA:   3'- gCGU----GGCUGUaUGGCCGGCU--AGUUcu -5'
24126 5' -54.2 NC_005263.2 + 47228 0.67 0.686725
Target:  5'- cCGCGCUGAacgaagcGCCGGCCGG-CAcGAc -3'
miRNA:   3'- -GCGUGGCUgua----UGGCCGGCUaGUuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.