miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24126 5' -54.2 NC_005263.2 + 22412 0.68 0.631282
Target:  5'- aCGCGCCGcCGUGCUcGCCGuGUCcGGGg -3'
miRNA:   3'- -GCGUGGCuGUAUGGcCGGC-UAGuUCU- -5'
24126 5' -54.2 NC_005263.2 + 25229 0.67 0.708606
Target:  5'- cCGUGCCGAUc--CCGGCCGA-CGAa- -3'
miRNA:   3'- -GCGUGGCUGuauGGCCGGCUaGUUcu -5'
24126 5' -54.2 NC_005263.2 + 1684 0.67 0.708606
Target:  5'- gCGCGCCGcCAguucggUAUUGGUCGGUUggGGc -3'
miRNA:   3'- -GCGUGGCuGU------AUGGCCGGCUAGuuCU- -5'
24126 5' -54.2 NC_005263.2 + 28360 0.67 0.708606
Target:  5'- aGCGCCGcCAgcgcGCCaGcGCCGAUCGcauAGAa -3'
miRNA:   3'- gCGUGGCuGUa---UGG-C-CGGCUAGU---UCU- -5'
24126 5' -54.2 NC_005263.2 + 24260 0.67 0.697698
Target:  5'- aGCACUgGACAgucacgaacaacacgACCGGCgcuuucgcggcgaCGAUCAAGAc -3'
miRNA:   3'- gCGUGG-CUGUa--------------UGGCCG-------------GCUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 8848 0.68 0.653531
Target:  5'- aGCAUCGcgcGCAgcUCGGCCGA-CGGGAu -3'
miRNA:   3'- gCGUGGC---UGUauGGCCGGCUaGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 37934 0.68 0.650197
Target:  5'- gCGCGCCGccggcagccggugcGCA-ACCGGCCGAUg---- -3'
miRNA:   3'- -GCGUGGC--------------UGUaUGGCCGGCUAguucu -5'
24126 5' -54.2 NC_005263.2 + 2766 0.68 0.642411
Target:  5'- uCGCgaccgACCGGCAUcacgaccucgcgACCgGGCUGGUCGAGu -3'
miRNA:   3'- -GCG-----UGGCUGUA------------UGG-CCGGCUAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 17192 0.68 0.641298
Target:  5'- gGCGCUcgaguggggauggGACAaGCUGGCCGGcagCAAGAu -3'
miRNA:   3'- gCGUGG-------------CUGUaUGGCCGGCUa--GUUCU- -5'
24126 5' -54.2 NC_005263.2 + 24642 0.66 0.719436
Target:  5'- aGCACUGACAgucgUACCGGgCGAg----- -3'
miRNA:   3'- gCGUGGCUGU----AUGGCCgGCUaguucu -5'
24126 5' -54.2 NC_005263.2 + 27386 0.66 0.719436
Target:  5'- gGCgGCCGGCGcgcugACCGGCUGcGUCAcGAc -3'
miRNA:   3'- gCG-UGGCUGUa----UGGCCGGC-UAGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 35524 0.66 0.719436
Target:  5'- gCGCGCCGACugcgcCCGGCgGcgCGcGGg -3'
miRNA:   3'- -GCGUGGCUGuau--GGCCGgCuaGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 19016 0.66 0.761757
Target:  5'- aCGCACUGACucgcGUAgcgaCGGCCGAUgcgcgccgcccCGAGGa -3'
miRNA:   3'- -GCGUGGCUG----UAUg---GCCGGCUA-----------GUUCU- -5'
24126 5' -54.2 NC_005263.2 + 44958 0.66 0.761757
Target:  5'- aGC-CCGGCcaGCUGGCCGAcuucuUCcAGAa -3'
miRNA:   3'- gCGuGGCUGuaUGGCCGGCU-----AGuUCU- -5'
24126 5' -54.2 NC_005263.2 + 3148 0.66 0.761757
Target:  5'- aGCACCGACGaGCacguGGCCGGgcuUCGuggcgcGGAa -3'
miRNA:   3'- gCGUGGCUGUaUGg---CCGGCU---AGU------UCU- -5'
24126 5' -54.2 NC_005263.2 + 5777 0.66 0.751352
Target:  5'- aCGCuucggUCGGCAccUugCGGCCGGUCGc-- -3'
miRNA:   3'- -GCGu----GGCUGU--AugGCCGGCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 38655 0.66 0.751352
Target:  5'- gCGCAUCGACGccaACCucGCCaaGAUCAAGGu -3'
miRNA:   3'- -GCGUGGCUGUa--UGGc-CGG--CUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 36302 0.66 0.740821
Target:  5'- uCGCGCgCGAagugacgACCGGCgCGuUCGAGGa -3'
miRNA:   3'- -GCGUG-GCUgua----UGGCCG-GCuAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 30303 0.66 0.740821
Target:  5'- aGCGCCgGGCGcgGCCGGCgucuugacgaCGAUCGAu- -3'
miRNA:   3'- gCGUGG-CUGUa-UGGCCG----------GCUAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 33222 0.66 0.730179
Target:  5'- cCGCACCuGCAc-UCGGCCGA-CAAGc -3'
miRNA:   3'- -GCGUGGcUGUauGGCCGGCUaGUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.