miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24126 5' -54.2 NC_005263.2 + 47478 0.66 0.772028
Target:  5'- gCGuCACUGGCAgcACCGGCCcgcuGUCGGGc -3'
miRNA:   3'- -GC-GUGGCUGUa-UGGCCGGc---UAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 47311 0.77 0.197313
Target:  5'- uGCGCCGGCG-GCCGGCaCGcUCAAGGu -3'
miRNA:   3'- gCGUGGCUGUaUGGCCG-GCuAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 47228 0.67 0.686725
Target:  5'- cCGCGCUGAacgaagcGCCGGCCGG-CAcGAc -3'
miRNA:   3'- -GCGUGGCUgua----UGGCCGGCUaGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 45728 0.68 0.619041
Target:  5'- gGCGCCGuCAUggguuacGCCGcGUCGAUCAAc- -3'
miRNA:   3'- gCGUGGCuGUA-------UGGC-CGGCUAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 45336 0.73 0.339597
Target:  5'- uCGCGaggUCGugAUGCCGGUCGGUCGcGAc -3'
miRNA:   3'- -GCGU---GGCugUAUGGCCGGCUAGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 44958 0.66 0.761757
Target:  5'- aGC-CCGGCcaGCUGGCCGAcuucuUCcAGAa -3'
miRNA:   3'- gCGuGGCUGuaUGGCCGGCU-----AGuUCU- -5'
24126 5' -54.2 NC_005263.2 + 42648 0.67 0.697698
Target:  5'- aGCGCCGACGUGgCaaCCGAUCGc-- -3'
miRNA:   3'- gCGUGGCUGUAUgGccGGCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 42009 0.78 0.172158
Target:  5'- aCGUGCCGGCAgugcgGCCGGCCGcgcCAAGGc -3'
miRNA:   3'- -GCGUGGCUGUa----UGGCCGGCua-GUUCU- -5'
24126 5' -54.2 NC_005263.2 + 41984 1.09 0.001207
Target:  5'- gCGCACCGACAUACCGGCCGAUCAAGAc -3'
miRNA:   3'- -GCGUGGCUGUAUGGCCGGCUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 40263 0.68 0.631282
Target:  5'- aGUGCgCGACGcgGCCGGCCaaccGAUCGAcGAa -3'
miRNA:   3'- gCGUG-GCUGUa-UGGCCGG----CUAGUU-CU- -5'
24126 5' -54.2 NC_005263.2 + 39232 0.68 0.631282
Target:  5'- uGCACCGGCAgcACgGGCCGcgUAu-- -3'
miRNA:   3'- gCGUGGCUGUa-UGgCCGGCuaGUucu -5'
24126 5' -54.2 NC_005263.2 + 39007 0.71 0.479625
Target:  5'- uGC-CCGuguuCGUgaACCGGCCGAUCGAc- -3'
miRNA:   3'- gCGuGGCu---GUA--UGGCCGGCUAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 38655 0.66 0.751352
Target:  5'- gCGCAUCGACGccaACCucGCCaaGAUCAAGGu -3'
miRNA:   3'- -GCGUGGCUGUa--UGGc-CGG--CUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 38428 0.86 0.04868
Target:  5'- uGCGCCGGCGUgacGCCGGCCacGGUCAAGAc -3'
miRNA:   3'- gCGUGGCUGUA---UGGCCGG--CUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 37934 0.68 0.650197
Target:  5'- gCGCGCCGccggcagccggugcGCA-ACCGGCCGAUg---- -3'
miRNA:   3'- -GCGUGGC--------------UGUaUGGCCGGCUAguucu -5'
24126 5' -54.2 NC_005263.2 + 37496 0.68 0.657974
Target:  5'- gGCGCCGACAUuCCGGCgcUugccaagcgcaugcaGAUCGAGc -3'
miRNA:   3'- gCGUGGCUGUAuGGCCG--G---------------CUAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 36302 0.66 0.740821
Target:  5'- uCGCGCgCGAagugacgACCGGCgCGuUCGAGGa -3'
miRNA:   3'- -GCGUG-GCUgua----UGGCCG-GCuAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 36005 0.72 0.410529
Target:  5'- gCGCGCCGcugcGCAUGCCaGGCCGcgacgaCAAGGu -3'
miRNA:   3'- -GCGUGGC----UGUAUGG-CCGGCua----GUUCU- -5'
24126 5' -54.2 NC_005263.2 + 35686 0.75 0.263361
Target:  5'- aGCGuCCGGCAggugauuggggucUGCCGGCCGG-CAAGGu -3'
miRNA:   3'- gCGU-GGCUGU-------------AUGGCCGGCUaGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 35524 0.66 0.719436
Target:  5'- gCGCGCCGACugcgcCCGGCgGcgCGcGGg -3'
miRNA:   3'- -GCGUGGCUGuau--GGCCGgCuaGUuCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.