miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24126 5' -54.2 NC_005263.2 + 17192 0.68 0.641298
Target:  5'- gGCGCUcgaguggggauggGACAaGCUGGCCGGcagCAAGAu -3'
miRNA:   3'- gCGUGG-------------CUGUaUGGCCGGCUa--GUUCU- -5'
24126 5' -54.2 NC_005263.2 + 22685 0.68 0.641298
Target:  5'- cCGCACCGcACGcGCCGaggauggcugucuGCCaGGUCGAGGc -3'
miRNA:   3'- -GCGUGGC-UGUaUGGC-------------CGG-CUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 22412 0.68 0.631282
Target:  5'- aCGCGCCGcCGUGCUcGCCGuGUCcGGGg -3'
miRNA:   3'- -GCGUGGCuGUAUGGcCGGC-UAGuUCU- -5'
24126 5' -54.2 NC_005263.2 + 39232 0.68 0.631282
Target:  5'- uGCACCGGCAgcACgGGCCGcgUAu-- -3'
miRNA:   3'- gCGUGGCUGUa-UGgCCGGCuaGUucu -5'
24126 5' -54.2 NC_005263.2 + 2757 0.68 0.631282
Target:  5'- uCGCgGCCGcCGUGCCGGUCGuguucGUCAcGAc -3'
miRNA:   3'- -GCG-UGGCuGUAUGGCCGGC-----UAGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 40263 0.68 0.631282
Target:  5'- aGUGCgCGACGcgGCCGGCCaaccGAUCGAcGAa -3'
miRNA:   3'- gCGUG-GCUGUa-UGGCCGG----CUAGUU-CU- -5'
24126 5' -54.2 NC_005263.2 + 45728 0.68 0.619041
Target:  5'- gGCGCCGuCAUggguuacGCCGcGUCGAUCAAc- -3'
miRNA:   3'- gCGUGGCuGUA-------UGGC-CGGCUAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 865 0.69 0.597938
Target:  5'- gCGUAcCCGuCGUGCCGGCCGGcgcuUCGu-- -3'
miRNA:   3'- -GCGU-GGCuGUAUGGCCGGCU----AGUucu -5'
24126 5' -54.2 NC_005263.2 + 30807 0.69 0.597938
Target:  5'- gGCGgCGACGUGCuCGGCgGA-CAGGu -3'
miRNA:   3'- gCGUgGCUGUAUG-GCCGgCUaGUUCu -5'
24126 5' -54.2 NC_005263.2 + 3339 0.69 0.586871
Target:  5'- gCGCGCCGcCGgcGCCGcGCgCGGUCGAGc -3'
miRNA:   3'- -GCGUGGCuGUa-UGGC-CG-GCUAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 35434 0.69 0.575842
Target:  5'- aCGCGaacgacgaccCCGGCGcGCCGGCCGA-CGAcGAu -3'
miRNA:   3'- -GCGU----------GGCUGUaUGGCCGGCUaGUU-CU- -5'
24126 5' -54.2 NC_005263.2 + 9072 0.69 0.575842
Target:  5'- aGCGCCucGACGUGCCaguucgGGUCGAUCGGc- -3'
miRNA:   3'- gCGUGG--CUGUAUGG------CCGGCUAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 23034 0.69 0.564861
Target:  5'- gCGCcacCCGAauUGCCGGUCGAcgUCGGGAu -3'
miRNA:   3'- -GCGu--GGCUguAUGGCCGGCU--AGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 17751 0.69 0.553935
Target:  5'- gGCGCCGGCGgcaGCgCGGCCGcgCucGGc -3'
miRNA:   3'- gCGUGGCUGUa--UG-GCCGGCuaGuuCU- -5'
24126 5' -54.2 NC_005263.2 + 35070 0.69 0.543073
Target:  5'- aGCGCCGucucGCAUAuCCcGCUGAUCAAGc -3'
miRNA:   3'- gCGUGGC----UGUAU-GGcCGGCUAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 23269 0.69 0.543073
Target:  5'- gCGCACCGGCAccgccguugccGCCGGCCGuau-AGGc -3'
miRNA:   3'- -GCGUGGCUGUa----------UGGCCGGCuaguUCU- -5'
24126 5' -54.2 NC_005263.2 + 29712 0.69 0.539827
Target:  5'- gCGCACCcGCGUGCCGGCgaagaacuucgccuUGAUCGu-- -3'
miRNA:   3'- -GCGUGGcUGUAUGGCCG--------------GCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 31711 0.7 0.521568
Target:  5'- cCGCACCcGCgAUGCCGGCCagcuucAUCAGGc -3'
miRNA:   3'- -GCGUGGcUG-UAUGGCCGGc-----UAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 25790 0.7 0.521568
Target:  5'- gCGCGCUGAgCGUGCCGGCauaaAUCAAa- -3'
miRNA:   3'- -GCGUGGCU-GUAUGGCCGgc--UAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 2691 0.7 0.51094
Target:  5'- uCGCGCCGGCGg--CGGCCGA-CAGa- -3'
miRNA:   3'- -GCGUGGCUGUaugGCCGGCUaGUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.