miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24126 5' -54.2 NC_005263.2 + 27386 0.66 0.719436
Target:  5'- gGCgGCCGGCGcgcugACCGGCUGcGUCAcGAc -3'
miRNA:   3'- gCG-UGGCUGUa----UGGCCGGC-UAGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 28360 0.67 0.708606
Target:  5'- aGCGCCGcCAgcgcGCCaGcGCCGAUCGcauAGAa -3'
miRNA:   3'- gCGUGGCuGUa---UGG-C-CGGCUAGU---UCU- -5'
24126 5' -54.2 NC_005263.2 + 1684 0.67 0.708606
Target:  5'- gCGCGCCGcCAguucggUAUUGGUCGGUUggGGc -3'
miRNA:   3'- -GCGUGGCuGU------AUGGCCGGCUAGuuCU- -5'
24126 5' -54.2 NC_005263.2 + 25229 0.67 0.708606
Target:  5'- cCGUGCCGAUc--CCGGCCGA-CGAa- -3'
miRNA:   3'- -GCGUGGCUGuauGGCCGGCUaGUUcu -5'
24126 5' -54.2 NC_005263.2 + 20732 0.67 0.697698
Target:  5'- gCGCGCCGGCcgccGCCGcGCCGcUCGc-- -3'
miRNA:   3'- -GCGUGGCUGua--UGGC-CGGCuAGUucu -5'
24126 5' -54.2 NC_005263.2 + 42648 0.67 0.697698
Target:  5'- aGCGCCGACGUGgCaaCCGAUCGc-- -3'
miRNA:   3'- gCGUGGCUGUAUgGccGGCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 11927 0.67 0.697698
Target:  5'- uGCGauauCCGGCA-GCCGGCCGGuaUCGAc- -3'
miRNA:   3'- gCGU----GGCUGUaUGGCCGGCU--AGUUcu -5'
24126 5' -54.2 NC_005263.2 + 24260 0.67 0.697698
Target:  5'- aGCACUgGACAgucacgaacaacacgACCGGCgcuuucgcggcgaCGAUCAAGAc -3'
miRNA:   3'- gCGUGG-CUGUa--------------UGGCCG-------------GCUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 47228 0.67 0.686725
Target:  5'- cCGCGCUGAacgaagcGCCGGCCGG-CAcGAc -3'
miRNA:   3'- -GCGUGGCUgua----UGGCCGGCUaGUuCU- -5'
24126 5' -54.2 NC_005263.2 + 1946 0.67 0.686725
Target:  5'- gGCACCGGCGacGCCGGCaaccgcguCGAUCu--- -3'
miRNA:   3'- gCGUGGCUGUa-UGGCCG--------GCUAGuucu -5'
24126 5' -54.2 NC_005263.2 + 20570 0.67 0.675699
Target:  5'- uGC-CCGGCcUGCCGGCCGugcCGAcGGg -3'
miRNA:   3'- gCGuGGCUGuAUGGCCGGCua-GUU-CU- -5'
24126 5' -54.2 NC_005263.2 + 25289 0.67 0.673488
Target:  5'- gCGCGCgCGACAgcgugaucuuuCCGucGUCGGUCGAGAa -3'
miRNA:   3'- -GCGUG-GCUGUau---------GGC--CGGCUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 30605 0.67 0.663521
Target:  5'- cCGCcugaucgAUCGACGcGCCGcGCgCGAUCAGGGc -3'
miRNA:   3'- -GCG-------UGGCUGUaUGGC-CG-GCUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 37496 0.68 0.657974
Target:  5'- gGCGCCGACAUuCCGGCgcUugccaagcgcaugcaGAUCGAGc -3'
miRNA:   3'- gCGUGGCUGUAuGGCCG--G---------------CUAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 8848 0.68 0.653531
Target:  5'- aGCAUCGcgcGCAgcUCGGCCGA-CGGGAu -3'
miRNA:   3'- gCGUGGC---UGUauGGCCGGCUaGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 27130 0.68 0.653531
Target:  5'- uGCACCGAaccCGUACCGGCUu-UCGu-- -3'
miRNA:   3'- gCGUGGCU---GUAUGGCCGGcuAGUucu -5'
24126 5' -54.2 NC_005263.2 + 37934 0.68 0.650197
Target:  5'- gCGCGCCGccggcagccggugcGCA-ACCGGCCGAUg---- -3'
miRNA:   3'- -GCGUGGC--------------UGUaUGGCCGGCUAguucu -5'
24126 5' -54.2 NC_005263.2 + 23422 0.68 0.642411
Target:  5'- gCGCGCCGcCGuUACCGGCgccccCGAUCGu-- -3'
miRNA:   3'- -GCGUGGCuGU-AUGGCCG-----GCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 26875 0.68 0.642411
Target:  5'- cCGCGCCGucgauGCGaaaGCCGGUCGAcgaCAGGAu -3'
miRNA:   3'- -GCGUGGC-----UGUa--UGGCCGGCUa--GUUCU- -5'
24126 5' -54.2 NC_005263.2 + 2766 0.68 0.642411
Target:  5'- uCGCgaccgACCGGCAUcacgaccucgcgACCgGGCUGGUCGAGu -3'
miRNA:   3'- -GCG-----UGGCUGUA------------UGG-CCGGCUAGUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.