miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24128 3' -51 NC_005263.2 + 41106 1.08 0.002624
Target:  5'- aAAAGCUGAACGACGUCAUCGCCGAACu -3'
miRNA:   3'- -UUUCGACUUGCUGCAGUAGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 45931 0.79 0.221286
Target:  5'- gAAGGCUGGGCG-CGUCucgCGCCGGAUc -3'
miRNA:   3'- -UUUCGACUUGCuGCAGua-GCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 24776 0.76 0.321796
Target:  5'- --cGCUcacGGGCGGCGUCGgcggcUCGCCGGGCg -3'
miRNA:   3'- uuuCGA---CUUGCUGCAGU-----AGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 17306 0.71 0.584784
Target:  5'- --cGCcGAGC-ACGUCGcCGCCGAGCa -3'
miRNA:   3'- uuuCGaCUUGcUGCAGUaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 16994 0.7 0.64245
Target:  5'- ---cCUGAGCGACG-CGacCGCCGAACu -3'
miRNA:   3'- uuucGACUUGCUGCaGUa-GCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 44881 0.7 0.675866
Target:  5'- --uGCUGccCGGCGUCAUCggggcgggcggcgGCCGGGCc -3'
miRNA:   3'- uuuCGACuuGCUGCAGUAG-------------CGGCUUG- -5'
24128 3' -51 NC_005263.2 + 16578 0.7 0.677013
Target:  5'- cAAGGCcGGcgGCGACG-CGuUCGCCGGGCu -3'
miRNA:   3'- -UUUCGaCU--UGCUGCaGU-AGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 37397 0.7 0.688456
Target:  5'- -uGGCUGcGCGACGUgCAUCGCguCGcGCg -3'
miRNA:   3'- uuUCGACuUGCUGCA-GUAGCG--GCuUG- -5'
24128 3' -51 NC_005263.2 + 32590 0.7 0.688456
Target:  5'- cGAGC---GCGAUGagcaCAUCGCCGAGCg -3'
miRNA:   3'- uUUCGacuUGCUGCa---GUAGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 39544 0.69 0.698705
Target:  5'- aAAGGCgacUGGACGACGcuggucgcggcauUCAUcacCGCCGAGCc -3'
miRNA:   3'- -UUUCG---ACUUGCUGC-------------AGUA---GCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 14284 0.69 0.711152
Target:  5'- cAAAGCUGAugcagcGCGAuCGUCAU-GCCGucGACg -3'
miRNA:   3'- -UUUCGACU------UGCU-GCAGUAgCGGC--UUG- -5'
24128 3' -51 NC_005263.2 + 30954 0.69 0.722378
Target:  5'- -cAGCcGAacaccGCGACGUCGaccgcuUCGCCGAGg -3'
miRNA:   3'- uuUCGaCU-----UGCUGCAGU------AGCGGCUUg -5'
24128 3' -51 NC_005263.2 + 9655 0.69 0.733505
Target:  5'- --cGCUgucGAGCGcaAUGUCGcCGCCGAGCa -3'
miRNA:   3'- uuuCGA---CUUGC--UGCAGUaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 22885 0.69 0.733505
Target:  5'- -cGGCcggGAucggcACGGCGUUcgUGCCGGACg -3'
miRNA:   3'- uuUCGa--CU-----UGCUGCAGuaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 24685 0.69 0.733505
Target:  5'- gGGGGCgccgGuAACGGCGgcg-CGCCGAACg -3'
miRNA:   3'- -UUUCGa---C-UUGCUGCaguaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 10074 0.69 0.744519
Target:  5'- gGAAGCcGAGCGACGcgggCAgcgCGUCGAGa -3'
miRNA:   3'- -UUUCGaCUUGCUGCa---GUa--GCGGCUUg -5'
24128 3' -51 NC_005263.2 + 26206 0.68 0.755409
Target:  5'- cGAGCUGcccuuGCGGCGUCGUCaacucgGUCGAuaGCg -3'
miRNA:   3'- uUUCGACu----UGCUGCAGUAG------CGGCU--UG- -5'
24128 3' -51 NC_005263.2 + 44538 0.68 0.766159
Target:  5'- -uGGC-GAACGAUGUgGUCgGCCGAcGCg -3'
miRNA:   3'- uuUCGaCUUGCUGCAgUAG-CGGCU-UG- -5'
24128 3' -51 NC_005263.2 + 10892 0.68 0.766159
Target:  5'- --cGCgucgUGAGCGGCG-UAUCGCCGcGCu -3'
miRNA:   3'- uuuCG----ACUUGCUGCaGUAGCGGCuUG- -5'
24128 3' -51 NC_005263.2 + 37584 0.68 0.766159
Target:  5'- --cGCUGcuCGuGCGUCAgcUCGCCGAcGCg -3'
miRNA:   3'- uuuCGACuuGC-UGCAGU--AGCGGCU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.