Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24128 | 3' | -51 | NC_005263.2 | + | 6892 | 0.66 | 0.880599 |
Target: 5'- uAAAGUUGcggccCGACGUCAgaucguacaccuucgCGUCGAACa -3' miRNA: 3'- -UUUCGACuu---GCUGCAGUa--------------GCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 9655 | 0.69 | 0.733505 |
Target: 5'- --cGCUgucGAGCGcaAUGUCGcCGCCGAGCa -3' miRNA: 3'- uuuCGA---CUUGC--UGCAGUaGCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 10074 | 0.69 | 0.744519 |
Target: 5'- gGAAGCcGAGCGACGcgggCAgcgCGUCGAGa -3' miRNA: 3'- -UUUCGaCUUGCUGCa---GUa--GCGGCUUg -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 10892 | 0.68 | 0.766159 |
Target: 5'- --cGCgucgUGAGCGGCG-UAUCGCCGcGCu -3' miRNA: 3'- uuuCG----ACUUGCUGCaGUAGCGGCuUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 11709 | 0.68 | 0.797446 |
Target: 5'- --cGCUGcGAgGGCGUCAU-GUCGAGCu -3' miRNA: 3'- uuuCGAC-UUgCUGCAGUAgCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 13242 | 0.67 | 0.845627 |
Target: 5'- cAAGUgGAAUuACGcauuuUCGUCGCCGGACg -3' miRNA: 3'- uUUCGaCUUGcUGC-----AGUAGCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 14104 | 0.68 | 0.776757 |
Target: 5'- -cGGCUGcGCGGCG--GUCGCCGucGCg -3' miRNA: 3'- uuUCGACuUGCUGCagUAGCGGCu-UG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 14284 | 0.69 | 0.711152 |
Target: 5'- cAAAGCUGAugcagcGCGAuCGUCAU-GCCGucGACg -3' miRNA: 3'- -UUUCGACU------UGCU-GCAGUAgCGGC--UUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 14463 | 0.67 | 0.827021 |
Target: 5'- cGAGCcGAGCGGCGgCA-CGCCuucGAGCa -3' miRNA: 3'- uUUCGaCUUGCUGCaGUaGCGG---CUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 16578 | 0.7 | 0.677013 |
Target: 5'- cAAGGCcGGcgGCGACG-CGuUCGCCGGGCu -3' miRNA: 3'- -UUUCGaCU--UGCUGCaGU-AGCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 16994 | 0.7 | 0.64245 |
Target: 5'- ---cCUGAGCGACG-CGacCGCCGAACu -3' miRNA: 3'- uuucGACUUGCUGCaGUa-GCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 17170 | 0.67 | 0.836443 |
Target: 5'- aGAAGCcGAaugcgcagcucGCGGCGUacgcCGUCGCCGcGCu -3' miRNA: 3'- -UUUCGaCU-----------UGCUGCA----GUAGCGGCuUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 17306 | 0.71 | 0.584784 |
Target: 5'- --cGCcGAGC-ACGUCGcCGCCGAGCa -3' miRNA: 3'- uuuCGaCUUGcUGCAGUaGCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 19829 | 0.67 | 0.827021 |
Target: 5'- cGAAcCUGAccuACGACGUC-UCGCUGcAGCg -3' miRNA: 3'- -UUUcGACU---UGCUGCAGuAGCGGC-UUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 20135 | 0.66 | 0.87166 |
Target: 5'- cAAGCgcgacgGuACGGcCGUCG-CGCCGGGCa -3' miRNA: 3'- uUUCGa-----CuUGCU-GCAGUaGCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 22885 | 0.69 | 0.733505 |
Target: 5'- -cGGCcggGAucggcACGGCGUUcgUGCCGGACg -3' miRNA: 3'- uuUCGa--CU-----UGCUGCAGuaGCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 23860 | 0.68 | 0.797446 |
Target: 5'- cGAAGCUG-GCGGCGUac-CGCCGcaaGGCg -3' miRNA: 3'- -UUUCGACuUGCUGCAguaGCGGC---UUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 24685 | 0.69 | 0.733505 |
Target: 5'- gGGGGCgccgGuAACGGCGgcg-CGCCGAACg -3' miRNA: 3'- -UUUCGa---C-UUGCUGCaguaGCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 24776 | 0.76 | 0.321796 |
Target: 5'- --cGCUcacGGGCGGCGUCGgcggcUCGCCGGGCg -3' miRNA: 3'- uuuCGA---CUUGCUGCAGU-----AGCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 25551 | 0.66 | 0.863245 |
Target: 5'- cGAGUUGAucgcgagcGCGACGUCGgcguccgCGCCGc-- -3' miRNA: 3'- uUUCGACU--------UGCUGCAGUa------GCGGCuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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