miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24128 3' -51 NC_005263.2 + 26206 0.68 0.755409
Target:  5'- cGAGCUGcccuuGCGGCGUCGUCaacucgGUCGAuaGCg -3'
miRNA:   3'- uUUCGACu----UGCUGCAGUAG------CGGCU--UG- -5'
24128 3' -51 NC_005263.2 + 26515 0.66 0.863245
Target:  5'- --uGUUGcgcGCGGCGUCGaCGCCGGcgGCg -3'
miRNA:   3'- uuuCGACu--UGCUGCAGUaGCGGCU--UG- -5'
24128 3' -51 NC_005263.2 + 27908 0.67 0.827021
Target:  5'- cAAAGCacucGACGGCGgcgCGUCGCCcGGCg -3'
miRNA:   3'- -UUUCGac--UUGCUGCa--GUAGCGGcUUG- -5'
24128 3' -51 NC_005263.2 + 28519 0.67 0.836443
Target:  5'- cGAAGUUGAACuuCGguUCGaCGCCGGGCu -3'
miRNA:   3'- -UUUCGACUUGcuGC--AGUaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 30954 0.69 0.722378
Target:  5'- -cAGCcGAacaccGCGACGUCGaccgcuUCGCCGAGg -3'
miRNA:   3'- uuUCGaCU-----UGCUGCAGU------AGCGGCUUg -5'
24128 3' -51 NC_005263.2 + 31440 0.67 0.845627
Target:  5'- --uGCUGAAUGu--UCA-CGCCGAACg -3'
miRNA:   3'- uuuCGACUUGCugcAGUaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 32590 0.7 0.688456
Target:  5'- cGAGC---GCGAUGagcaCAUCGCCGAGCg -3'
miRNA:   3'- uUUCGacuUGCUGCa---GUAGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 33587 0.67 0.836443
Target:  5'- aAAAGCggcGAACGGCG-CcgCGCUGAu- -3'
miRNA:   3'- -UUUCGa--CUUGCUGCaGuaGCGGCUug -5'
24128 3' -51 NC_005263.2 + 37397 0.7 0.688456
Target:  5'- -uGGCUGcGCGACGUgCAUCGCguCGcGCg -3'
miRNA:   3'- uuUCGACuUGCUGCA-GUAGCG--GCuUG- -5'
24128 3' -51 NC_005263.2 + 37584 0.68 0.766159
Target:  5'- --cGCUGcuCGuGCGUCAgcUCGCCGAcGCg -3'
miRNA:   3'- uuuCGACuuGC-UGCAGU--AGCGGCU-UG- -5'
24128 3' -51 NC_005263.2 + 38793 0.68 0.766159
Target:  5'- gGAAGCggccACGAgCGgCAUCGCUGAGCu -3'
miRNA:   3'- -UUUCGacu-UGCU-GCaGUAGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 38852 0.68 0.776757
Target:  5'- -cGGaCUcGAGCGGCGUCAcggucggcacguUCGCCGuGCu -3'
miRNA:   3'- uuUC-GA-CUUGCUGCAGU------------AGCGGCuUG- -5'
24128 3' -51 NC_005263.2 + 39092 0.66 0.87166
Target:  5'- uGAGCcGGACGGCGaguacgcgcgacUCGUgCGCCGuGCg -3'
miRNA:   3'- uUUCGaCUUGCUGC------------AGUA-GCGGCuUG- -5'
24128 3' -51 NC_005263.2 + 39266 0.67 0.836443
Target:  5'- cGAGCUGcgcGCGAUGcuugaucgCA-CGCCGAGCg -3'
miRNA:   3'- uUUCGACu--UGCUGCa-------GUaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 39335 0.66 0.8798
Target:  5'- --cGCgGGcCGGCGUCAUCcuGCCGcGCa -3'
miRNA:   3'- uuuCGaCUuGCUGCAGUAG--CGGCuUG- -5'
24128 3' -51 NC_005263.2 + 39544 0.69 0.698705
Target:  5'- aAAGGCgacUGGACGACGcuggucgcggcauUCAUcacCGCCGAGCc -3'
miRNA:   3'- -UUUCG---ACUUGCUGC-------------AGUA---GCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 40215 0.66 0.87166
Target:  5'- gGAAGCaUGGGCGA--UCAUCcGCCGAu- -3'
miRNA:   3'- -UUUCG-ACUUGCUgcAGUAG-CGGCUug -5'
24128 3' -51 NC_005263.2 + 41106 1.08 0.002624
Target:  5'- aAAAGCUGAACGACGUCAUCGCCGAACu -3'
miRNA:   3'- -UUUCGACUUGCUGCAGUAGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 41781 0.67 0.845627
Target:  5'- -cGGCgcGGGCGAC-UCGcgCGCCGGACu -3'
miRNA:   3'- uuUCGa-CUUGCUGcAGUa-GCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 44538 0.68 0.766159
Target:  5'- -uGGC-GAACGAUGUgGUCgGCCGAcGCg -3'
miRNA:   3'- uuUCGaCUUGCUGCAgUAG-CGGCU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.