miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24128 3' -51 NC_005263.2 + 17170 0.67 0.836443
Target:  5'- aGAAGCcGAaugcgcagcucGCGGCGUacgcCGUCGCCGcGCu -3'
miRNA:   3'- -UUUCGaCU-----------UGCUGCA----GUAGCGGCuUG- -5'
24128 3' -51 NC_005263.2 + 17306 0.71 0.584784
Target:  5'- --cGCcGAGC-ACGUCGcCGCCGAGCa -3'
miRNA:   3'- uuuCGaCUUGcUGCAGUaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 24685 0.69 0.733505
Target:  5'- gGGGGCgccgGuAACGGCGgcg-CGCCGAACg -3'
miRNA:   3'- -UUUCGa---C-UUGCUGCaguaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 13242 0.67 0.845627
Target:  5'- cAAGUgGAAUuACGcauuuUCGUCGCCGGACg -3'
miRNA:   3'- uUUCGaCUUGcUGC-----AGUAGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 41106 1.08 0.002624
Target:  5'- aAAAGCUGAACGACGUCAUCGCCGAACu -3'
miRNA:   3'- -UUUCGACUUGCUGCAGUAGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 20135 0.66 0.87166
Target:  5'- cAAGCgcgacgGuACGGcCGUCG-CGCCGGGCa -3'
miRNA:   3'- uUUCGa-----CuUGCU-GCAGUaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 33587 0.67 0.836443
Target:  5'- aAAAGCggcGAACGGCG-CcgCGCUGAu- -3'
miRNA:   3'- -UUUCGa--CUUGCUGCaGuaGCGGCUug -5'
24128 3' -51 NC_005263.2 + 28519 0.67 0.836443
Target:  5'- cGAAGUUGAACuuCGguUCGaCGCCGGGCu -3'
miRNA:   3'- -UUUCGACUUGcuGC--AGUaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 19829 0.67 0.827021
Target:  5'- cGAAcCUGAccuACGACGUC-UCGCUGcAGCg -3'
miRNA:   3'- -UUUcGACU---UGCUGCAGuAGCGGC-UUG- -5'
24128 3' -51 NC_005263.2 + 27908 0.67 0.827021
Target:  5'- cAAAGCacucGACGGCGgcgCGUCGCCcGGCg -3'
miRNA:   3'- -UUUCGac--UUGCUGCa--GUAGCGGcUUG- -5'
24128 3' -51 NC_005263.2 + 23860 0.68 0.797446
Target:  5'- cGAAGCUG-GCGGCGUac-CGCCGcaaGGCg -3'
miRNA:   3'- -UUUCGACuUGCUGCAguaGCGGC---UUG- -5'
24128 3' -51 NC_005263.2 + 38852 0.68 0.776757
Target:  5'- -cGGaCUcGAGCGGCGUCAcggucggcacguUCGCCGuGCu -3'
miRNA:   3'- uuUC-GA-CUUGCUGCAGU------------AGCGGCuUG- -5'
24128 3' -51 NC_005263.2 + 10892 0.68 0.766159
Target:  5'- --cGCgucgUGAGCGGCG-UAUCGCCGcGCu -3'
miRNA:   3'- uuuCG----ACUUGCUGCaGUAGCGGCuUG- -5'
24128 3' -51 NC_005263.2 + 44538 0.68 0.766159
Target:  5'- -uGGC-GAACGAUGUgGUCgGCCGAcGCg -3'
miRNA:   3'- uuUCGaCUUGCUGCAgUAG-CGGCU-UG- -5'
24128 3' -51 NC_005263.2 + 10074 0.69 0.744519
Target:  5'- gGAAGCcGAGCGACGcgggCAgcgCGUCGAGa -3'
miRNA:   3'- -UUUCGaCUUGCUGCa---GUa--GCGGCUUg -5'
24128 3' -51 NC_005263.2 + 39544 0.69 0.698705
Target:  5'- aAAGGCgacUGGACGACGcuggucgcggcauUCAUcacCGCCGAGCc -3'
miRNA:   3'- -UUUCG---ACUUGCUGC-------------AGUA---GCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 16578 0.7 0.677013
Target:  5'- cAAGGCcGGcgGCGACG-CGuUCGCCGGGCu -3'
miRNA:   3'- -UUUCGaCU--UGCUGCaGU-AGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 44881 0.7 0.675866
Target:  5'- --uGCUGccCGGCGUCAUCggggcgggcggcgGCCGGGCc -3'
miRNA:   3'- uuuCGACuuGCUGCAGUAG-------------CGGCUUG- -5'
24128 3' -51 NC_005263.2 + 16994 0.7 0.64245
Target:  5'- ---cCUGAGCGACG-CGacCGCCGAACu -3'
miRNA:   3'- uuucGACUUGCUGCaGUa-GCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 24776 0.76 0.321796
Target:  5'- --cGCUcacGGGCGGCGUCGgcggcUCGCCGGGCg -3'
miRNA:   3'- uuuCGA---CUUGCUGCAGU-----AGCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.