miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24130 5' -55.9 NC_005263.2 + 22408 0.66 0.651615
Target:  5'- --aCGUacGCGCcGCCgUGCUCGcCGUGUc -3'
miRNA:   3'- uaaGCA--CGCGaUGG-ACGAGCuGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 37917 0.66 0.651615
Target:  5'- --cCG-GCGaggcuucgGCCUGCUCGcgauuCGCGCu -3'
miRNA:   3'- uaaGCaCGCga------UGGACGAGCu----GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 37388 0.66 0.651615
Target:  5'- --gCGUcGCcCUGgCUGCgCGACGUGCa -3'
miRNA:   3'- uaaGCA-CGcGAUgGACGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 28208 0.66 0.650503
Target:  5'- --cCGUGgcgaGCUguuggugGCCUGCaUCGGcCGCGCu -3'
miRNA:   3'- uaaGCACg---CGA-------UGGACG-AGCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 7297 0.66 0.640485
Target:  5'- --gCGUGC-CUGCggccagguCUGCgCGAUGCGCu -3'
miRNA:   3'- uaaGCACGcGAUG--------GACGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 13053 0.66 0.640485
Target:  5'- --aCG-GCGCUcAUCUGCUCu-UGCGCu -3'
miRNA:   3'- uaaGCaCGCGA-UGGACGAGcuGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 10162 0.66 0.640485
Target:  5'- -aUCGgccgguUGCGC-ACCgGCUgccggCGGCGCGCc -3'
miRNA:   3'- uaAGC------ACGCGaUGGaCGA-----GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 41621 0.66 0.640485
Target:  5'- cGUUCGU-CGaCUGCCUGgUUGcacugcggcccACGCGCu -3'
miRNA:   3'- -UAAGCAcGC-GAUGGACgAGC-----------UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 47350 0.66 0.633802
Target:  5'- -aUCGcgcUGCGCgucGCCgaaaugggcggcgcGUUCGAUGCGCg -3'
miRNA:   3'- uaAGC---ACGCGa--UGGa-------------CGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 19430 0.66 0.633802
Target:  5'- uGUUCG-GCG-UGCC-GCUCGAuacgaugaaccagauCGCGCg -3'
miRNA:   3'- -UAAGCaCGCgAUGGaCGAGCU---------------GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 18947 0.66 0.629347
Target:  5'- -cUCGaGCGC-GCCgGUUCGA-GCGCa -3'
miRNA:   3'- uaAGCaCGCGaUGGaCGAGCUgCGCG- -5'
24130 5' -55.9 NC_005263.2 + 19772 0.66 0.629347
Target:  5'- --aCGUGCGCcucACggGCUCGGCG-GCc -3'
miRNA:   3'- uaaGCACGCGa--UGgaCGAGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 41717 0.66 0.629347
Target:  5'- --cUGUGUGacCUACCcuacgGCaCGACGCGCa -3'
miRNA:   3'- uaaGCACGC--GAUGGa----CGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 46169 0.66 0.629347
Target:  5'- --cCG-GCGUcGCCggUGC-CGGCGCGCu -3'
miRNA:   3'- uaaGCaCGCGaUGG--ACGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 41245 0.66 0.629347
Target:  5'- -cUCGUGCGCgagggcUACCUGUcgccggucgugUCGcCGuCGCu -3'
miRNA:   3'- uaAGCACGCG------AUGGACG-----------AGCuGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 44370 0.66 0.629347
Target:  5'- --aCGUacGCGCUGauCCgGCcCGGCGUGCg -3'
miRNA:   3'- uaaGCA--CGCGAU--GGaCGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 18779 0.66 0.618212
Target:  5'- -cUCGcGCugGUUAUCgUGCUCGcCGCGCg -3'
miRNA:   3'- uaAGCaCG--CGAUGG-ACGAGCuGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 33649 0.66 0.618212
Target:  5'- --gCGUGcCGCcGCUcgGCUCGaaagagGCGCGCg -3'
miRNA:   3'- uaaGCAC-GCGaUGGa-CGAGC------UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 32521 0.66 0.618212
Target:  5'- -cUCGUgcaccggccGCGCUACCgucauucggcGUUCaGCGCGCg -3'
miRNA:   3'- uaAGCA---------CGCGAUGGa---------CGAGcUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 27615 0.66 0.618212
Target:  5'- -gUCGaugaUGCGCacgGCCUuuacCUCGACGgGCg -3'
miRNA:   3'- uaAGC----ACGCGa--UGGAc---GAGCUGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.