miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24130 5' -55.9 NC_005263.2 + 9553 0.7 0.39021
Target:  5'- --aCGcgGCGCUcgcgGCUUGCcaggCGGCGCGCu -3'
miRNA:   3'- uaaGCa-CGCGA----UGGACGa---GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 24008 0.7 0.399412
Target:  5'- --gCGccGCGCUGCaaagUGC-CGACGCGCu -3'
miRNA:   3'- uaaGCa-CGCGAUGg---ACGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 13659 0.7 0.399412
Target:  5'- -gUCGUGCGC-ACC-GCgucgCGAaUGCGCa -3'
miRNA:   3'- uaAGCACGCGaUGGaCGa---GCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 20687 0.7 0.408751
Target:  5'- uGUUCGgcgGCGCgaaACCUGCgccggucgUGACGCaGCc -3'
miRNA:   3'- -UAAGCa--CGCGa--UGGACGa-------GCUGCG-CG- -5'
24130 5' -55.9 NC_005263.2 + 39048 0.7 0.408751
Target:  5'- -gUCGagGCGCUACagCUGUUCGccgaggcgaaaGCGCGCu -3'
miRNA:   3'- uaAGCa-CGCGAUG--GACGAGC-----------UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 43863 0.7 0.412525
Target:  5'- --aCGUGCGCggcauCCUgacGCcgacguuuucgagcgUCGACGCGCa -3'
miRNA:   3'- uaaGCACGCGau---GGA---CG---------------AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 40497 0.69 0.418226
Target:  5'- -gUCGUGCG--AUUUGCUCGACacggaaGCGCg -3'
miRNA:   3'- uaAGCACGCgaUGGACGAGCUG------CGCG- -5'
24130 5' -55.9 NC_005263.2 + 44974 0.69 0.418226
Target:  5'- -gUCG-GUGCUgACCUGUccgggaUCGAgGCGCg -3'
miRNA:   3'- uaAGCaCGCGA-UGGACG------AGCUgCGCG- -5'
24130 5' -55.9 NC_005263.2 + 37611 0.69 0.427833
Target:  5'- --aCGUGCGCUucgacggcaagcACCUGCgCGGCGaccuGCu -3'
miRNA:   3'- uaaGCACGCGA------------UGGACGaGCUGCg---CG- -5'
24130 5' -55.9 NC_005263.2 + 41480 0.69 0.427833
Target:  5'- -----cGCGCga-CUGCUCGAcCGCGCc -3'
miRNA:   3'- uaagcaCGCGaugGACGAGCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 6644 0.69 0.427833
Target:  5'- -gUCGaGCaGC-GCCUGCUCGAucauaUGCGCg -3'
miRNA:   3'- uaAGCaCG-CGaUGGACGAGCU-----GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 33216 0.69 0.43757
Target:  5'- -cUCGUGcCGC-ACCUGCacUCGGCcgacaagcuGCGCg -3'
miRNA:   3'- uaAGCAC-GCGaUGGACG--AGCUG---------CGCG- -5'
24130 5' -55.9 NC_005263.2 + 41045 0.69 0.43757
Target:  5'- -cUCGcaGCGCUcgcACCUGCcauuggcgCGAUGCGCc -3'
miRNA:   3'- uaAGCa-CGCGA---UGGACGa-------GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 30593 0.69 0.43757
Target:  5'- --cCGUGauagcCGCcGCCUGaucgaUCGACGCGCc -3'
miRNA:   3'- uaaGCAC-----GCGaUGGACg----AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 16835 0.69 0.45541
Target:  5'- --aCGUGCGacagcacuucgACCUGCcCGGCGcCGCg -3'
miRNA:   3'- uaaGCACGCga---------UGGACGaGCUGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 38920 0.69 0.467519
Target:  5'- --cCG-GCGCcgcGCCgaGCUCGACGuCGCg -3'
miRNA:   3'- uaaGCaCGCGa--UGGa-CGAGCUGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 680 0.68 0.477736
Target:  5'- -aUCGUaGCGCgcCUUGC-CGAgCGCGCc -3'
miRNA:   3'- uaAGCA-CGCGauGGACGaGCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 12314 0.68 0.477736
Target:  5'- uUUCGgcacGCGUUACCUGCUCugcuauGGCaCGCc -3'
miRNA:   3'- uAAGCa---CGCGAUGGACGAG------CUGcGCG- -5'
24130 5' -55.9 NC_005263.2 + 45383 0.68 0.487024
Target:  5'- cGUUCGUacgugaugcacgcGCGCUgcgcaugcACCUGCcgagCGGcCGCGCg -3'
miRNA:   3'- -UAAGCA-------------CGCGA--------UGGACGa---GCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 9884 0.68 0.488061
Target:  5'- -cUCG-GCGCUuUCaUGCUCGucgucgGCGCGCg -3'
miRNA:   3'- uaAGCaCGCGAuGG-ACGAGC------UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.