Results 1 - 20 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 1925 | 0.66 | 0.726647 |
Target: 5'- gCGC-GUCUGCacgagcgcGCCGG-CACcgGCGACg -3' miRNA: 3'- -GCGaCAGACG--------UGGCUaGUGa-CGCUGg -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 2679 | 0.67 | 0.650086 |
Target: 5'- gCGUUGUg-GUAgCUGAUCGC-GCGGCCg -3' miRNA: 3'- -GCGACAgaCGU-GGCUAGUGaCGCUGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 2799 | 0.67 | 0.638994 |
Target: 5'- gGCUGgUCgagugccaugaGCACCGAguauUCGCaaaGCGACCa -3' miRNA: 3'- gCGAC-AGa----------CGUGGCU----AGUGa--CGCUGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 3341 | 0.68 | 0.594662 |
Target: 5'- gCGCcGcCgGCGCCGcgCGCggucgaGCGACCa -3' miRNA: 3'- -GCGaCaGaCGUGGCuaGUGa-----CGCUGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 6229 | 0.72 | 0.34607 |
Target: 5'- aGCgga-UGC-CCGAUCGCUcGCGGCCa -3' miRNA: 3'- gCGacagACGuGGCUAGUGA-CGCUGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 9698 | 0.66 | 0.715904 |
Target: 5'- gCGCuuUGcCUGC-UCGAcCGCUGCGGCg -3' miRNA: 3'- -GCG--ACaGACGuGGCUaGUGACGCUGg -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 10677 | 0.67 | 0.661162 |
Target: 5'- gGCccagGUCgGCauaGCCGAcCACUucGCGACCg -3' miRNA: 3'- gCGa---CAGaCG---UGGCUaGUGA--CGCUGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 11497 | 0.67 | 0.615692 |
Target: 5'- gCGCcGUCgccuuguUGCACUGGUCGCgcGCGAUg -3' miRNA: 3'- -GCGaCAG-------ACGUGGCUAGUGa-CGCUGg -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 11932 | 0.7 | 0.45668 |
Target: 5'- aGCguugaagGUC-GCACCGGUCGC-GCaGGCCg -3' miRNA: 3'- gCGa------CAGaCGUGGCUAGUGaCG-CUGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 12519 | 0.71 | 0.427227 |
Target: 5'- gGCaGUUUGCGcCCGGUCAgauuCUGaCGGCCg -3' miRNA: 3'- gCGaCAGACGU-GGCUAGU----GAC-GCUGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 12562 | 0.69 | 0.529288 |
Target: 5'- uGCUgcGUUUGCgaacgugcuGCCGAUCGCcgGCGGCa -3' miRNA: 3'- gCGA--CAGACG---------UGGCUAGUGa-CGCUGg -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 14095 | 0.68 | 0.561717 |
Target: 5'- gGCUGguaccggCUGCGCggCGGUCGCcgucGCGAUCg -3' miRNA: 3'- gCGACa------GACGUG--GCUAGUGa---CGCUGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 15379 | 0.66 | 0.678821 |
Target: 5'- aCGCUGUCggguagcgacccgGcCGCCGugcaugCGCUcGUGACCg -3' miRNA: 3'- -GCGACAGa------------C-GUGGCua----GUGA-CGCUGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 15632 | 0.68 | 0.594662 |
Target: 5'- uCGCUGaaUGCGCCGA-CGCcgaucuacGCGAUCg -3' miRNA: 3'- -GCGACagACGUGGCUaGUGa-------CGCUGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 16488 | 0.66 | 0.694179 |
Target: 5'- gGCg--CUGCGCCGcgCGgcCgucGCGACCg -3' miRNA: 3'- gCGacaGACGUGGCuaGU--Ga--CGCUGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 16949 | 0.66 | 0.726647 |
Target: 5'- aCGa--UCUGCGCCGA-CACgcaagGCGuACCg -3' miRNA: 3'- -GCgacAGACGUGGCUaGUGa----CGC-UGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 17386 | 0.72 | 0.379848 |
Target: 5'- aGCUGUCUGCcggcgcgGCCGcgCGCcugGCGGgCg -3' miRNA: 3'- gCGACAGACG-------UGGCuaGUGa--CGCUgG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 19750 | 0.67 | 0.67221 |
Target: 5'- gCGCUGgc-GCGCUGGcggCGCUcGUGGCCg -3' miRNA: 3'- -GCGACagaCGUGGCUa--GUGA-CGCUGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 19798 | 0.67 | 0.661162 |
Target: 5'- aGCUGauggGUGCCGGUCGCa-CGGCCg -3' miRNA: 3'- gCGACaga-CGUGGCUAGUGacGCUGG- -5' |
|||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 20339 | 0.73 | 0.337762 |
Target: 5'- cCGCUGUCgGCACCGAUac---CGGCCu -3' miRNA: 3'- -GCGACAGaCGUGGCUAgugacGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home