miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24132 3' -54.9 NC_005263.2 + 20339 0.73 0.337762
Target:  5'- cCGCUGUCgGCACCGAUac---CGGCCu -3'
miRNA:   3'- -GCGACAGaCGUGGCUAgugacGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 37398 0.67 0.67221
Target:  5'- gGCUGcgCgacgUGCAUCGcGUCGC-GCGGCCg -3'
miRNA:   3'- gCGACa-G----ACGUGGC-UAGUGaCGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 41266 0.66 0.683219
Target:  5'- uCGCcgGUCgUGuCGCCG-UCGCUGCGcuuCCc -3'
miRNA:   3'- -GCGa-CAG-AC-GUGGCuAGUGACGCu--GG- -5'
24132 3' -54.9 NC_005263.2 + 16949 0.66 0.726647
Target:  5'- aCGa--UCUGCGCCGA-CACgcaagGCGuACCg -3'
miRNA:   3'- -GCgacAGACGUGGCUaGUGa----CGC-UGG- -5'
24132 3' -54.9 NC_005263.2 + 27426 0.69 0.508054
Target:  5'- uGCUGUCgcgucGCGCuCGGcaaaCACUGCGAgCCc -3'
miRNA:   3'- gCGACAGa----CGUG-GCUa---GUGACGCU-GG- -5'
24132 3' -54.9 NC_005263.2 + 44856 0.69 0.518628
Target:  5'- aCGcCUGUCUGCGCggCGAUCGC-GCcuACCu -3'
miRNA:   3'- -GC-GACAGACGUG--GCUAGUGaCGc-UGG- -5'
24132 3' -54.9 NC_005263.2 + 20962 0.68 0.561717
Target:  5'- gCGCUGUCggacauCGCCGAcgCGgCUGCGcGCCu -3'
miRNA:   3'- -GCGACAGac----GUGGCUa-GU-GACGC-UGG- -5'
24132 3' -54.9 NC_005263.2 + 14095 0.68 0.561717
Target:  5'- gGCUGguaccggCUGCGCggCGGUCGCcgucGCGAUCg -3'
miRNA:   3'- gCGACa------GACGUG--GCUAGUGa---CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 11497 0.67 0.615692
Target:  5'- gCGCcGUCgccuuguUGCACUGGUCGCgcGCGAUg -3'
miRNA:   3'- -GCGaCAG-------ACGUGGCUAGUGa-CGCUGg -5'
24132 3' -54.9 NC_005263.2 + 19750 0.67 0.67221
Target:  5'- gCGCUGgc-GCGCUGGcggCGCUcGUGGCCg -3'
miRNA:   3'- -GCGACagaCGUGGCUa--GUGA-CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 10677 0.67 0.661162
Target:  5'- gGCccagGUCgGCauaGCCGAcCACUucGCGACCg -3'
miRNA:   3'- gCGa---CAGaCG---UGGCUaGUGA--CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 47263 0.68 0.594662
Target:  5'- aCGCUGUCcGCGCuCGGUagugACgUGCGcGCCg -3'
miRNA:   3'- -GCGACAGaCGUG-GCUAg---UG-ACGC-UGG- -5'
24132 3' -54.9 NC_005263.2 + 25062 0.72 0.34607
Target:  5'- uGCUGUaCUGCuuCUGAaCGgUGCGGCCg -3'
miRNA:   3'- gCGACA-GACGu-GGCUaGUgACGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 19798 0.67 0.661162
Target:  5'- aGCUGauggGUGCCGGUCGCa-CGGCCg -3'
miRNA:   3'- gCGACaga-CGUGGCUAGUGacGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 37453 0.7 0.465727
Target:  5'- gCGCgGUCUGCGCgGcGUCcauguguACUGCGGCg -3'
miRNA:   3'- -GCGaCAGACGUGgC-UAG-------UGACGCUGg -5'
24132 3' -54.9 NC_005263.2 + 42847 0.68 0.594662
Target:  5'- cCGCUGcCgGCACCGccCGCUGaUGACg -3'
miRNA:   3'- -GCGACaGaCGUGGCuaGUGAC-GCUGg -5'
24132 3' -54.9 NC_005263.2 + 44633 0.67 0.661162
Target:  5'- uCGCUG-CgGCAgCUGAUCgaGCUGCG-CCu -3'
miRNA:   3'- -GCGACaGaCGU-GGCUAG--UGACGCuGG- -5'
24132 3' -54.9 NC_005263.2 + 25252 0.66 0.683219
Target:  5'- gGCuUGUaCgcaGCACCGAUCAgCUGCauGCCg -3'
miRNA:   3'- gCG-ACA-Ga--CGUGGCUAGU-GACGc-UGG- -5'
24132 3' -54.9 NC_005263.2 + 30935 0.69 0.497573
Target:  5'- gCGCUucgcaaucGUCUGCcaGCCGAaCACcGCGACg -3'
miRNA:   3'- -GCGA--------CAGACG--UGGCUaGUGaCGCUGg -5'
24132 3' -54.9 NC_005263.2 + 20741 0.69 0.540028
Target:  5'- cCGCcG-CcGCGCCGcUCGCUgGCGGCCu -3'
miRNA:   3'- -GCGaCaGaCGUGGCuAGUGA-CGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.