miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24132 3' -54.9 NC_005263.2 + 6229 0.72 0.34607
Target:  5'- aGCgga-UGC-CCGAUCGCUcGCGGCCa -3'
miRNA:   3'- gCGacagACGuGGCUAGUGA-CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 47498 0.68 0.583637
Target:  5'- cCGCUGUCggGCACUGccuacGUUACUGaUGGCg -3'
miRNA:   3'- -GCGACAGa-CGUGGC-----UAGUGAC-GCUGg -5'
24132 3' -54.9 NC_005263.2 + 32746 0.69 0.540028
Target:  5'- gCGCUGccgcUUGCGCgGcgCAaUGCGACCg -3'
miRNA:   3'- -GCGACa---GACGUGgCuaGUgACGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 12562 0.69 0.529288
Target:  5'- uGCUgcGUUUGCgaacgugcuGCCGAUCGCcgGCGGCa -3'
miRNA:   3'- gCGA--CAGACG---------UGGCUAGUGa-CGCUGg -5'
24132 3' -54.9 NC_005263.2 + 28144 0.7 0.476909
Target:  5'- aCGCUGcCaGCGCCGAgCAC-GCGAgCa -3'
miRNA:   3'- -GCGACaGaCGUGGCUaGUGaCGCUgG- -5'
24132 3' -54.9 NC_005263.2 + 11932 0.7 0.45668
Target:  5'- aGCguugaagGUC-GCACCGGUCGC-GCaGGCCg -3'
miRNA:   3'- gCGa------CAGaCGUGGCUAGUGaCG-CUGG- -5'
24132 3' -54.9 NC_005263.2 + 12519 0.71 0.427227
Target:  5'- gGCaGUUUGCGcCCGGUCAgauuCUGaCGGCCg -3'
miRNA:   3'- gCGaCAGACGU-GGCUAGU----GAC-GCUGG- -5'
24132 3' -54.9 NC_005263.2 + 17386 0.72 0.379848
Target:  5'- aGCUGUCUGCcggcgcgGCCGcgCGCcugGCGGgCg -3'
miRNA:   3'- gCGACAGACG-------UGGCuaGUGa--CGCUgG- -5'
24132 3' -54.9 NC_005263.2 + 21960 0.72 0.354522
Target:  5'- gCGCUGUUUGCGCaguuGAUCGCcaacGuCGACCc -3'
miRNA:   3'- -GCGACAGACGUGg---CUAGUGa---C-GCUGG- -5'
24132 3' -54.9 NC_005263.2 + 15632 0.68 0.594662
Target:  5'- uCGCUGaaUGCGCCGA-CGCcgaucuacGCGAUCg -3'
miRNA:   3'- -GCGACagACGUGGCUaGUGa-------CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 3341 0.68 0.594662
Target:  5'- gCGCcGcCgGCGCCGcgCGCggucgaGCGACCa -3'
miRNA:   3'- -GCGaCaGaCGUGGCuaGUGa-----CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 28216 0.67 0.620129
Target:  5'- aGCUGUugguggcCUGCAUCGGccgcgcucgccgcgcUCGCcGUGACCu -3'
miRNA:   3'- gCGACA-------GACGUGGCU---------------AGUGaCGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 26976 0.66 0.715904
Target:  5'- uGCaGUCcugcGCGCCGAgcagcaccCGCUGCG-CCg -3'
miRNA:   3'- gCGaCAGa---CGUGGCUa-------GUGACGCuGG- -5'
24132 3' -54.9 NC_005263.2 + 16488 0.66 0.694179
Target:  5'- gGCg--CUGCGCCGcgCGgcCgucGCGACCg -3'
miRNA:   3'- gCGacaGACGUGGCuaGU--Ga--CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 15379 0.66 0.678821
Target:  5'- aCGCUGUCggguagcgacccgGcCGCCGugcaugCGCUcGUGACCg -3'
miRNA:   3'- -GCGACAGa------------C-GUGGCua----GUGA-CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 22827 0.67 0.661162
Target:  5'- aCGCUGUCgcgcGCGCgGAUCGgcaUGCaGCUg -3'
miRNA:   3'- -GCGACAGa---CGUGgCUAGUg--ACGcUGG- -5'
24132 3' -54.9 NC_005263.2 + 2679 0.67 0.650086
Target:  5'- gCGUUGUg-GUAgCUGAUCGC-GCGGCCg -3'
miRNA:   3'- -GCGACAgaCGU-GGCUAGUGaCGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 32395 0.67 0.650086
Target:  5'- gCGCUgGUCgaaccGC-CCGuaGUCGCUGCGAgCu -3'
miRNA:   3'- -GCGA-CAGa----CGuGGC--UAGUGACGCUgG- -5'
24132 3' -54.9 NC_005263.2 + 32562 0.67 0.638994
Target:  5'- gCGC-GUCUGCGCCGAgauugauaaauUCAUcGaCGAUCu -3'
miRNA:   3'- -GCGaCAGACGUGGCU-----------AGUGaC-GCUGG- -5'
24132 3' -54.9 NC_005263.2 + 2799 0.67 0.638994
Target:  5'- gGCUGgUCgagugccaugaGCACCGAguauUCGCaaaGCGACCa -3'
miRNA:   3'- gCGAC-AGa----------CGUGGCU----AGUGa--CGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.