miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24139 5' -58.1 NC_005263.2 + 30190 0.66 0.577497
Target:  5'- aCGUUGGagcccgGGGCGCGCcgAUCUGcGCg -3'
miRNA:   3'- aGCAACUgcug--CCCGCGCG--UAGGC-CG- -5'
24139 5' -58.1 NC_005263.2 + 6939 0.66 0.577497
Target:  5'- aCGUaucGACGACGGccgcccacgccGCGCGaacgCCGGUu -3'
miRNA:   3'- aGCAa--CUGCUGCC-----------CGCGCgua-GGCCG- -5'
24139 5' -58.1 NC_005263.2 + 38415 0.66 0.566857
Target:  5'- gUCGc--GCGuCGGGUGCGCcggcgugacgCCGGCc -3'
miRNA:   3'- -AGCaacUGCuGCCCGCGCGua--------GGCCG- -5'
24139 5' -58.1 NC_005263.2 + 32320 0.66 0.566857
Target:  5'- gUCGaucGACGACGGGCGaCGCAcUuuGu- -3'
miRNA:   3'- -AGCaa-CUGCUGCCCGC-GCGU-AggCcg -5'
24139 5' -58.1 NC_005263.2 + 14031 0.66 0.566857
Target:  5'- aCGgcGACGguucggccACGGGCGCcGCGUCgaGcGCa -3'
miRNA:   3'- aGCaaCUGC--------UGCCCGCG-CGUAGg-C-CG- -5'
24139 5' -58.1 NC_005263.2 + 36199 0.66 0.556266
Target:  5'- uUCGUUGACGAaGaGCGCcuGCAcgagcacgagaUUCGGCg -3'
miRNA:   3'- -AGCAACUGCUgCcCGCG--CGU-----------AGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 9451 0.66 0.556266
Target:  5'- ----aGACGggcaccACGGGCagcgGCGCGcCCGGCu -3'
miRNA:   3'- agcaaCUGC------UGCCCG----CGCGUaGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 24839 0.66 0.556266
Target:  5'- gCGgcaACGGCGgugccGGUGCGCcagCCGGCg -3'
miRNA:   3'- aGCaacUGCUGC-----CCGCGCGua-GGCCG- -5'
24139 5' -58.1 NC_005263.2 + 47732 0.66 0.55521
Target:  5'- aUCGUUGGCGGuuGcCGCcuguucgcgaaagGCAUCUGGCu -3'
miRNA:   3'- -AGCAACUGCUgcCcGCG-------------CGUAGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 10399 0.66 0.552046
Target:  5'- cCGgccGGCGAgcgggucCGGcGCGCGUucaacgaacgccugAUCCGGCg -3'
miRNA:   3'- aGCaa-CUGCU-------GCC-CGCGCG--------------UAGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 17388 0.66 0.545734
Target:  5'- cUGUcUGcCGGCGcGGcCGCGCGcCUGGCg -3'
miRNA:   3'- aGCA-ACuGCUGC-CC-GCGCGUaGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 47249 0.66 0.545734
Target:  5'- cCGgc-ACGACGGGUaCGCuGUCCGcGCu -3'
miRNA:   3'- aGCaacUGCUGCCCGcGCG-UAGGC-CG- -5'
24139 5' -58.1 NC_005263.2 + 41662 0.66 0.545734
Target:  5'- cUCGUgcucUGGCGGCagaucgucGGGCGCGgAcUgCGGCc -3'
miRNA:   3'- -AGCA----ACUGCUG--------CCCGCGCgU-AgGCCG- -5'
24139 5' -58.1 NC_005263.2 + 15577 0.66 0.545734
Target:  5'- aCGccGaAUGACGGuaGCGCggCCGGUg -3'
miRNA:   3'- aGCaaC-UGCUGCCcgCGCGuaGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 18851 0.66 0.539445
Target:  5'- gUCGaagUGACuggugugccgcaGugGGaGCGUGCAuuugcagcgacaaaaUCCGGCg -3'
miRNA:   3'- -AGCa--ACUG------------CugCC-CGCGCGU---------------AGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 10178 0.66 0.535267
Target:  5'- cCGgcUGcCGGCGGcGCGCcuGCGcCCGGCu -3'
miRNA:   3'- aGCa-ACuGCUGCC-CGCG--CGUaGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 37435 0.66 0.535267
Target:  5'- gUCGUcauACGuCGGcGCGCGCGgucugCgCGGCg -3'
miRNA:   3'- -AGCAac-UGCuGCC-CGCGCGUa----G-GCCG- -5'
24139 5' -58.1 NC_005263.2 + 28765 0.66 0.534224
Target:  5'- ----cGACGAagguguaaauguCGGGCuccugguugccuuGCGCAUCCGGg -3'
miRNA:   3'- agcaaCUGCU------------GCCCG-------------CGCGUAGGCCg -5'
24139 5' -58.1 NC_005263.2 + 33671 0.66 0.524871
Target:  5'- -aGUcGAUG-CGGGCGCGaAUCUuGGCg -3'
miRNA:   3'- agCAaCUGCuGCCCGCGCgUAGG-CCG- -5'
24139 5' -58.1 NC_005263.2 + 30692 0.66 0.524871
Target:  5'- cUGUUGcaccuGCGACaccgcccgccaGGCGCGCGgccgcgCCGGCa -3'
miRNA:   3'- aGCAAC-----UGCUGc----------CCGCGCGUa-----GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.