miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24140 5' -55.3 NC_005263.2 + 35798 0.66 0.682724
Target:  5'- -cGUGcUGGCGccGCUCGGcaaGUACGACGa -3'
miRNA:   3'- uaUACaGCCGC--CGAGCCa--CGUGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 22376 0.66 0.682724
Target:  5'- -cGUGucgaUCGGCGGCaUCGG-GCAgGccGCGa -3'
miRNA:   3'- uaUAC----AGCCGCCG-AGCCaCGUgU--UGC- -5'
24140 5' -55.3 NC_005263.2 + 24845 0.66 0.682724
Target:  5'- -----aCGGCGGUgcCGGUGCGCcagccGGCGg -3'
miRNA:   3'- uauacaGCCGCCGa-GCCACGUG-----UUGC- -5'
24140 5' -55.3 NC_005263.2 + 2682 0.66 0.678287
Target:  5'- uUGUGguagcugaucgcgCGGCcGCUCGGcaggugcaUGCGCAGCGc -3'
miRNA:   3'- uAUACa------------GCCGcCGAGCC--------ACGUGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 17034 0.66 0.671618
Target:  5'- -gAUGUCGcaGCGGCU-GGUG-GCGGCGu -3'
miRNA:   3'- uaUACAGC--CGCCGAgCCACgUGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 25517 0.66 0.660473
Target:  5'- ---gGUCGGCGuCUCGGgcuggcuugGCGCAgaGCGc -3'
miRNA:   3'- uauaCAGCCGCcGAGCCa--------CGUGU--UGC- -5'
24140 5' -55.3 NC_005263.2 + 35539 0.66 0.649301
Target:  5'- -----cCGGCGGCgcgCGGgcggGCGCuACGg -3'
miRNA:   3'- uauacaGCCGCCGa--GCCa---CGUGuUGC- -5'
24140 5' -55.3 NC_005263.2 + 8844 0.66 0.649301
Target:  5'- -gAUGUagguaGGCGGCgcgCGGgGCGCGAg- -3'
miRNA:   3'- uaUACAg----CCGCCGa--GCCaCGUGUUgc -5'
24140 5' -55.3 NC_005263.2 + 41739 0.66 0.649301
Target:  5'- ------gGGCGGCaacuUCGGgcgGCACGGCGc -3'
miRNA:   3'- uauacagCCGCCG----AGCCa--CGUGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 15589 0.66 0.638112
Target:  5'- ---gGUaGcGCGGC-CGGUGCACgAGCGa -3'
miRNA:   3'- uauaCAgC-CGCCGaGCCACGUG-UUGC- -5'
24140 5' -55.3 NC_005263.2 + 25020 0.66 0.636993
Target:  5'- -gGUGgCGGUGGCUgCGGUGgcguguaCGCGGCa -3'
miRNA:   3'- uaUACaGCCGCCGA-GCCAC-------GUGUUGc -5'
24140 5' -55.3 NC_005263.2 + 15481 0.67 0.593405
Target:  5'- -cGUGcugCGGCGGCgCGGUgaGCAuCAGCa -3'
miRNA:   3'- uaUACa--GCCGCCGaGCCA--CGU-GUUGc -5'
24140 5' -55.3 NC_005263.2 + 39140 0.67 0.560194
Target:  5'- ---cGUCGGCGGCaCcGUGUcgGCGACGu -3'
miRNA:   3'- uauaCAGCCGCCGaGcCACG--UGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 47422 0.68 0.538337
Target:  5'- ----aUCGGCGcGCUCGGcaagGCGCGcuACGa -3'
miRNA:   3'- uauacAGCCGC-CGAGCCa---CGUGU--UGC- -5'
24140 5' -55.3 NC_005263.2 + 1639 0.68 0.538337
Target:  5'- ---cGUCGGCGGCguagcccUGGaUGCGCuGCGc -3'
miRNA:   3'- uauaCAGCCGCCGa------GCC-ACGUGuUGC- -5'
24140 5' -55.3 NC_005263.2 + 32674 0.68 0.527518
Target:  5'- ---gGUCGGCGGCgaugUCGacGUGCGuCAGCa -3'
miRNA:   3'- uauaCAGCCGCCG----AGC--CACGU-GUUGc -5'
24140 5' -55.3 NC_005263.2 + 14171 0.68 0.506132
Target:  5'- ---gGcCGGCGGC-CGGUGUGC-GCGa -3'
miRNA:   3'- uauaCaGCCGCCGaGCCACGUGuUGC- -5'
24140 5' -55.3 NC_005263.2 + 43361 0.68 0.506132
Target:  5'- -gAUGUCGGUGaaagcuggcguGCUCGcGgGCGCGACGu -3'
miRNA:   3'- uaUACAGCCGC-----------CGAGC-CaCGUGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 29428 0.68 0.502956
Target:  5'- ---aGUCGGCGGC-CGGUaggcauccgccauuGCAuCGGCGu -3'
miRNA:   3'- uauaCAGCCGCCGaGCCA--------------CGU-GUUGC- -5'
24140 5' -55.3 NC_005263.2 + 6122 0.69 0.495578
Target:  5'- --uUGaUCGGcCGGUaugUCGGUGCGCGAUc -3'
miRNA:   3'- uauAC-AGCC-GCCG---AGCCACGUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.